RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	SLC9A6	Q92581	669 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	MCUR1	Q96AQ8	359 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	AURKB	Q96GD4	344 aa	Predicted RBP	11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	WDR77	Q9BQA1	342 aa	Predicted RBP	11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	CPPED1	Q9BRF8	314 aa	Predicted RBP	11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	SLC39A3	Q9BRY0	314 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	NUDT9	Q9BW91	350 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	ACTRT3	Q9BYD9	372 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	DEFB126	Q9BYW3	111 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	C1orf21	Q9H246	121 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	FOLH1B	Q9HBA9	442 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658		Q9N2J8	555 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	SLC6A13	Q9NSD5	602 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	EXD2	Q9NVH0	621 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	THUMPD1	Q9NXG2	353 aa	Known RBP	11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	SLC25A37	Q9NYZ2	338 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	ZNF639	Q9UID6	485 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658	PCDHGB3	Q9Y5G1	929 aa		11.06	□□□□□ -0.64
DDB1-223	ENST00000543658		A0A1W2PQ72	361 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ERICH4	A6NGS2	130 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	FXYD1	O00168	92 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	HRK	O00198	91 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ZFAND5	O76080	213 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	IGKV3-11	P04433	115 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	T-ENOL	P0DO92	83 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ITGA3	P26006	1051 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	KRT20	P35900	424 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	EIF2S3	P41091	472 aa	Known RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	MAGEA8	P43361	318 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	SLC7A2	P52569	658 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	UCN	P55089	124 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	SLC37A1	P57057	533 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	DSTN	P60981	165 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	DCAF7	P61962	342 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	AIMP2	Q13155	320 aa	Known RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	SRSF6	Q13247	344 aa	Known RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	MYBPC3	Q14896	1274 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	CRTC2	Q53ET0	693 aa	Predicted RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	NANOGP8	Q6NSW7	305 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	MFSD12	Q6NUT3	480 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	CDC73	Q6P1J9	531 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	SPACA3	Q8IXA5	215 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	KBTBD2	Q8IY47	623 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ZNF321P	Q8N8H1	164 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	COX18	Q8N8Q8	333 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	NFAM1	Q8NET5	270 aa	Predicted RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	OR8K3	Q8NH51	312 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	C16orf52	Q8NHV5	167 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	FBXO30	Q8TB52	745 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ZCCHC14	Q8WYQ9	949 aa	Known RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	DOCK10	Q96BY6	2186 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	MESP1	Q9BRJ9	268 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	BTBD10	Q9BSF8	475 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	YIPF4	Q9BSR8	244 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ITPA	Q9BY32	194 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	OR51I1	Q9H343	314 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	NANOG	Q9H9S0	305 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	MMP25	Q9NPA2	562 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	ATP13A2	Q9NQ11	1180 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	NTM	Q9P121	344 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	PPIE	Q9UNP9	301 aa	Known RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	OR10H1	Q9Y4A9	318 aa		11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.05	□□□□□ -0.64
DDB1-223	ENST00000543658	DCHS1	Q96JQ0	3298 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	CPAMD8	Q8IZJ3	1885 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	TRBV5-3	A0A0A0MS03	114 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	TMEM8B	A6NDV4	472 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	ARGFX	A6NJG6	315 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	C1QTNF9B	B2RNN3	333 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	NKX2-8	O15522	239 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	EFS	O43281	561 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	DNAJA2	O60884	412 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	STAMBP	O95630	424 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	SERPINA7	P05543	415 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	C1QTNF9	P0C862	333 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	HOXB9	P17482	250 aa	Predicted RBP	11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	S1PR1	P21453	382 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	SLC6A2	P23975	617 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	PTPN6	P29350	595 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	EMD	P50402	254 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	CASP9	P55211	416 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	NRG3	P56975	720 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	RPS26	P62854	115 aa	Known RBP	11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	RNF4	P78317	190 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	PSPH	P78330	225 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	GNA13	Q14344	377 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	EBP	Q15125	230 aa	Known RBP	11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	RGN	Q15493	299 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	RABL3	Q5HYI8	236 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	SAMD4B	Q5PRF9	694 aa	Known RBP	11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	DCAF10	Q5QP82	559 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	GCNT6	Q5T4J0	391 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	ATP1A1-AS1	Q5TC04	95 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	C16orf62	Q7Z3J2	963 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	MSRB3	Q8IXL7	192 aa		11.04	□□□□□ -0.64
DDB1-223	ENST00000543658	C9orf40	Q8IXQ3	194 aa		11.04	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms