RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 BTBD16Q32M84 506 aa17.29■□□□□ 0.36
SFSWAP-203ENST00000535236 TRIM46Q7Z4K8 759 aa17.29■□□□□ 0.36
SFSWAP-203ENST00000535236 CHST14Q8NCH0 376 aa17.29■□□□□ 0.36
SFSWAP-203ENST00000535236 SERINC2Q96SA4 455 aa17.29■□□□□ 0.36
SFSWAP-203ENST00000535236 CWH43Q9H720 699 aa17.29■□□□□ 0.36
SFSWAP-203ENST00000535236 NIPAL4Q0D2K0 466 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 GRIN2CQ14957 1233 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 TEX26Q8N6G2 289 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 PRR11Q96HE9 360 aaPredicted RBP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 LRR1Q96L50 414 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 CCNL2Q96S94 520 aaPredicted RBP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 CCDC106Q9BWC9 280 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 MTHFD2LQ9H903 347 aaPredicted RBP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 PARP4Q9UKK3 1724 aaKnown RBP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 CA3P07451 260 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 MAGEA3P43357 314 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 NTHL1P78549 312 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 TCEAL1Q15170 157 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 OR4D1Q15615 310 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 PIGGQ5H8A4 983 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 POLR1CO15160 346 aaPredicted RBP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 SSX5O60225 188 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 UCHL1P09936 223 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 RPS3P23396 243 aaKnown RBP eCLIP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 MELKQ14680 651 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 ACBD7Q8N6N7 88 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 OR4K13Q8NH42 304 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 MAB21L2Q9Y586 359 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 RAB11BQ15907 218 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 TMEM19Q96HH6 336 aa17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 COL14A1Q05707 1796 aaKnown RBP17.28■□□□□ 0.36
SFSWAP-203ENST00000535236 TYROBPO43914 113 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 CLCN2P51788 898 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 SERTAD2Q14140 314 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 C22orf42Q6IC83 251 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 GALNT6Q8NCL4 622 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 RPLP0P6Q8NHW5 317 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 COQ8AQ8NI60 647 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 GCDHQ92947 438 aaPredicted RBP17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 FAM46AQ96IP4 442 aaKnown RBP17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 C7orf34Q96L11 122 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 CRB3Q9BUF7 120 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 IFNA1P01562 189 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 CD40LGP29965 261 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 PSPHP78330 225 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 NDUFAF5Q5TEU4 345 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 CCM2LQ9NUG4 571 aaPredicted RBP17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 A0A1W2PPW3 197 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 SOBPA7XYQ1 873 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 MPPED1O15442 326 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 ZNF28P17035 718 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 ZNF81P51508 661 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 CTXN1P60606 82 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 COL9A2Q14055 689 aaPredicted RBP17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 TRIM73Q86UV7 250 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 OR6Q1Q8NGQ2 317 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 SCRN2Q96FV2 425 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 SLC45A3Q96JT2 553 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 ACAD8Q9UKU7 415 aa17.27■□□□□ 0.36
SFSWAP-203ENST00000535236 PCDH17O14917 1159 aa17.27■□□□□ 0.35
SFSWAP-203ENST00000535236 GJA8P48165 433 aa17.27■□□□□ 0.35
SFSWAP-203ENST00000535236 APOFQ13790 326 aa17.27■□□□□ 0.35
SFSWAP-203ENST00000535236 KANK2Q63ZY3 851 aa17.27■□□□□ 0.35
SFSWAP-203ENST00000535236 WDTC1Q8N5D0 677 aa17.27■□□□□ 0.35
SFSWAP-203ENST00000535236 MAGIXQ9H6Y5 334 aa17.27■□□□□ 0.35
SFSWAP-203ENST00000535236 F5H0A9 414 aaPredicted RBP17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 KIAA0355O15063 1070 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 TMEM225BP0DP42 221 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 PLGLAQ15195 96 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 IER5LQ5T953 404 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 SLC41A3Q96GZ6 507 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 MYRFLQ96LU7 910 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 USB1Q9BQ65 265 aaKnown RBP17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 PRLP01236 227 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 ETFAP13804 333 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 PITPNBP48739 271 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 NKX3-2P78367 333 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 ACVR1CQ8NER5 493 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 SFXN2Q96NB2 322 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 LIN28AQ9H9Z2 209 aaKnown RBP17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 GJD2Q9UKL4 321 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 UBR1Q8IWV7 1749 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 TRAPPC13A5PLN9 417 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 PRAMEF26H0Y7S4 382 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 S100PP25815 95 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 ARSDP51689 593 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 AKR1C2P52895 323 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 NPRL3Q12980 569 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 MFSD13AQ14CX5 517 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 C6orf141Q5SZD1 244 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 XKR5Q6UX68 686 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 OR6C4Q8NGE1 309 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 OR52B6Q8NGF0 335 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 NELL2Q99435 816 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 GMLQ99445 158 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 PHOX2BQ99453 314 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 RBM24Q9BX46 236 aaKnown RBP17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 ALOXE3Q9BYJ1 711 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 OR2S2Q9NQN1 319 aa17.26■□□□□ 0.35
SFSWAP-203ENST00000535236 FAM86C1Q9NVL1 165 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms