RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CEPT1Q9Y6K0 416 aa6.54□□□□□ -1.36
SDCBP-208ENST00000520228 AKAP13Q12802 2813 aa6.54□□□□□ -1.36
SDCBP-208ENST00000520228 COL5A1P20908 1838 aaPredicted RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 IGHV1OR21-1A0A087WYE8 117 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 FAM90A8PA6NJQ4 464 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 CCDC188H7C350 402 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 OR1I1O60431 355 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 VAPBO95292 243 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 SLC35G4P0C7Q5 338 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 FAM90A13PP0C7W8 464 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 FAM90A24PP0C7X0 464 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 NMBRP28336 390 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 HNRNPH1P31943 449 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 RPL3P39023 403 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 NSG1P42857 185 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PCYT1AP49585 367 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PRLHRP49683 370 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 HTR6P50406 440 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PDX1P52945 283 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 NANOS2P60321 138 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 KRTAP10-11P60412 298 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 ZFP36L1Q07352 338 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 CSTF3Q12996 717 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PTK6Q13882 451 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 ITIH4Q14624 930 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 EFNB3Q15768 340 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 MMEL1Q495T6 779 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 C6orf141Q5SZD1 244 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 RNASEH2BQ5TBB1 312 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 FAM69BQ5VUD6 431 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 ZNF449Q6P9G9 518 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 CES3Q6UWW8 571 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PACS1Q6VY07 963 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 SYT10Q6XYQ8 523 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 NEK10Q6ZWH5 1172 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PCGF5Q86SE9 256 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 SDCCAG8Q86SQ7 713 aaPredicted RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 LSMEM2Q8N112 164 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 FBXL14Q8N1E6 418 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 CLIP4Q8N3C7 705 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 NAT8LQ8N9F0 302 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 OR14A16Q8NHC5 309 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 WDR36Q8NI36 951 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 HM13Q8TCT9 377 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 CREB3L4Q8TEY5 395 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PHF21BQ96EK2 531 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 SERPINB12Q96P63 405 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 C1QTNF5Q9BXJ0 243 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 WWP1Q9H0M0 922 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 POLR1BQ9H9Y6 1135 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 UCK1Q9HA47 277 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 RDH14Q9HBH5 336 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 MRM3Q9HC36 420 aaKnown RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 EPB41L5Q9HCM4 733 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 SLC40A1Q9NP59 571 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 TREX1Q9NSU2 369 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 MARCH4Q9P2E8 410 aaPredicted RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 ZNF624Q9P2J8 865 aaPredicted RBP6.53□□□□□ -1.36
SDCBP-208ENST00000520228 PSMD13Q9UNM6 376 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 SHROOM3Q8TF72 1996 aa6.53□□□□□ -1.36
SDCBP-208ENST00000520228 FRYQ5TBA9 3013 aa6.52□□□□□ -1.36
SDCBP-208ENST00000520228 IGHV5-10-1A0A0J9YXX1 117 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 FAM237BA0A1B0GVD1 139 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 LILRA5A6NI73 299 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 DNALI1O14645 258 aaPredicted RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 TTI1O43156 1089 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 DUX1O43812 170 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 NDUFS3O75489 264 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 FTH1P02794 183 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 EIF2S1P05198 315 aaKnown RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 OR56A5P0C7T3 313 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 AMD1P17707 334 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 IVDP26440 423 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 RBMS1P29558 406 aaKnown RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 CCKBRP32239 447 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 TTPAP49638 278 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 THBS3P49746 956 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 LIMK2P53671 638 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 RPA4Q13156 261 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 EIF3IQ13347 325 aaKnown RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 DHX34Q14147 1143 aaKnown RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 FRG1Q14331 258 aaKnown RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 KRT33BQ14525 404 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 ANKRD20A4Q4UJ75 823 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 DNAJC21Q5F1R6 531 aaKnown RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 NEPROQ6NW34 567 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 WDR74Q6RFH5 385 aaPredicted RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 TMEM26Q6ZUK4 368 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 LDB1Q86U70 411 aaPredicted RBP6.52□□□□□ -1.37
SDCBP-208ENST00000520228 HAPLN4Q86UW8 402 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 HOOK3Q86VS8 718 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 FBXO39Q8N4B4 442 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 OTUD6BQ8N6M0 293 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 SPATA4Q8NEY3 305 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 OR4D9Q8NGE8 314 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 TMEM159Q96B96 161 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 C12orf66Q96MD2 445 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 WDFY2Q96P53 400 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 KRT12Q99456 494 aa6.52□□□□□ -1.37
SDCBP-208ENST00000520228 CMKLR1Q99788 373 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms