RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 AKAP7Q9P0M2 348 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 C5orf52A6NGY3 159 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 MPZL2O60487 215 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CDC123O75794 336 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 HLA-DQB2P05538 268 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CPEP16870 476 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CSF2RBP32927 897 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 IL10RBQ08334 325 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ECH1Q13011 328 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 SYTL3Q4VX76 610 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 C18orf63Q68DL7 685 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 KIAA1211LQ6NV74 962 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 H3F3CQ6NXT2 135 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 C3orf33Q6P1S2 294 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 KRT77Q7Z794 578 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 FAM151AQ8WW52 585 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 BRI3BPQ8WY22 251 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 POP5Q969H6 163 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 TMEM41AQ96HV5 264 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 C14orf144Q96I85 54 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 TCEAL7Q9BRU2 100 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 GLIS2Q9BZE0 524 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 EXOSC3Q9NQT5 275 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 PXMP2Q9NR77 195 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 OR12D3Q9UGF7 316 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CBY1Q9Y3M2 126 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 RPL36Q9Y3U8 105 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 DMRT1Q9Y5R6 373 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 A0A1W2PPE3 182 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF879B4DU55 563 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 RGS14O43566 566 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC19A2O60779 497 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 GUCA1CO95843 209 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 GASTP01350 101 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 STAG3L1P0CL83 205 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 NQO2P16083 231 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF8P17098 575 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ACHEP22303 614 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 HOXC13P31276 330 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CD79BP40259 229 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ACTR1BP42025 376 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 SPCS3P61009 180 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ACY1Q03154 408 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 IRF4Q15306 451 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CASP12Q6UXS9 341 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 SETD7Q8WTS6 366 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 WNT8BQ93098 351 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 COPS8Q99627 209 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 IPPKQ9H8X2 491 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 LRTM1Q9HBL6 345 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 WBP1LQ9NX94 342 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 FKBPLQ9UIM3 349 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 TCAPO15273 167 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 SEMG1P04279 462 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ICAM1P05362 532 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 BCKDHAP12694 445 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 NPBWR1P48145 328 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 TAS2R60P59551 318 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CRB2Q5IJ48 1285 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 B3GNTL1Q67FW5 361 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 OR56B4Q8NH76 319 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF382Q96SR6 550 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 CDT1Q9H211 546 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 PRM3Q9NNZ6 103 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 DDIT4Q9NX09 232 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 PIPOXQ9P0Z9 390 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 LY75O60449 1722 aa11.41□□□□□ -0.58
LIMCH1-213ENST00000511496 A0A0U1RQF3 1178 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 DVL2O14641 736 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 TLX2O43763 284 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 STX11O75558 287 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 SOD1P00441 154 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 CELP19835 753 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 SOX18P35713 384 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC36A2Q495M3 483 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 ABHD15Q6UXT9 468 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 QSOX2Q6ZRP7 698 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 CTU1Q7Z7A3 348 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 LAS2Q8IYD9 372 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 RNASE11Q8TAA1 199 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 ING5Q8WYH8 240 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 NELL1Q92832 810 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 S100PBPQ96BU1 408 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 TOX2Q96NM4 488 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 GINS4Q9BRT9 223 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 RNF32Q9H0A6 362 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC25A19Q9HC21 320 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 PPP1R14DQ9NXH3 145 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 TAS2R13Q9NYV9 303 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 TVP23BQ9NYZ1 205 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 NME7Q9Y5B8 376 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 NPTNQ9Y639 398 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 UBXN7O94888 489 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 PIPP12273 146 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 ADRA1AP35348 466 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 EFNA5P52803 228 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 RAB2AP61019 212 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 ERV3-1Q14264 604 aa11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 RBM39Q14498 530 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-213ENST00000511496 OR7E24Q6IFN5 339 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms