RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PPM1BO75688 479 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 ALDH3A1P30838 453 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 NTSP30990 170 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 MPIP34949 423 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 MASP1P48740 699 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 PLCXD2Q0VAA5 305 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 DUSP8Q13202 625 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 TMEM198Q66K66 360 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 TMEM211Q6ICI0 200 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 NOXRED1Q6NXP6 359 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 IKBIPQ70UQ0 350 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 TICAM1Q8IUC6 712 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 TCP10LQ8TDR4 215 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 SARAFQ96BY9 339 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 DMRTA2Q96SC8 542 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 PROK2Q9HC23 129 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 EML4Q9HC35 981 aaKnown RBP13.86□□□□□ -0.19
USP39-217ENST00000491659 CHST11Q9NPF2 352 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 QPCTLQ9NXS2 382 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 COQ3Q9NZJ6 369 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 SLC17A7Q9P2U7 560 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 NAV2Q8IVL1 2488 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 TRGV5A0A0B4J1U4 118 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 A0A1B0GVC2 190 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 FRG2CA6NGY1 282 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 FIGNL2A6NMB9 653 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 ADAM10O14672 748 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 SUSD5O60279 629 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 HCN1O60741 890 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 SEC22BO75396 215 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 SNX4O95219 450 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 CLDN14O95500 239 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 CELA3AP09093 270 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 NAGAP17050 411 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 PRPH2P23942 346 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 GDF1P27539 372 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 HTR1EP28566 365 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 CEBPEQ15744 281 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 KRT71Q3SY84 523 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 KANK2Q63ZY3 851 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 FAM71E1Q6IPT2 247 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 RNF165Q6ZSG1 346 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 PACS2Q86VP3 889 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 LIX1Q8N485 282 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 SIMC1Q8NDZ2 872 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 KAT2AQ92830 837 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 OMA1Q96E52 524 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 RILPQ96NA2 401 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 MECRQ9BV79 373 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 TMEM109Q9BVC6 243 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 PARD6BQ9BYG5 372 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 STMN4Q9H169 189 aaPredicted RBP13.85□□□□□ -0.19
USP39-217ENST00000491659 METTL7AQ9H8H3 244 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 LRTM1Q9HBL6 345 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 C1orf109Q9NX04 203 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 NINQ8N4C6 2090 aa13.85□□□□□ -0.19
USP39-217ENST00000491659 PHF3Q92576 2039 aaKnown RBP13.85□□□□□ -0.19
USP39-217ENST00000491659 DNAJC13O75165 2243 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 NPIPB8E9PQR5 432 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 HNRNPRO43390 633 aaKnown RBP13.84□□□□□ -0.19
USP39-217ENST00000491659 COQ9O75208 318 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 TRIM3O75382 744 aaPredicted RBP13.84□□□□□ -0.19
USP39-217ENST00000491659 SLITRK5O94991 958 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 RFPL3SP0C7P2 107 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 DRD5P21918 477 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 SOX18P35713 384 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 PPICP45877 212 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 EMDP50402 254 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 NCBP2P52298 156 aaKnown RBP eCLIP13.84□□□□□ -0.193e-6■■□□□ 12.2
USP39-217ENST00000491659 PSPHP78330 225 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 ZNF630Q2M218 657 aaPredicted RBP13.84□□□□□ -0.19
USP39-217ENST00000491659 GXYLT1Q4G148 440 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 WLSQ5T9L3 541 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 BICRALQ6AI39 1079 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 SP5Q6BEB4 398 aaPredicted RBP13.84□□□□□ -0.19
USP39-217ENST00000491659 NUP54Q7Z3B4 507 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 MARVELD3Q96A59 401 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 SDCCAG3Q96C92 435 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 ANGPTL4Q9BY76 406 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 RUBCNLQ9H714 662 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 PNPLA3Q9NST1 481 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 ACAD8Q9UKU7 415 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 CCL27Q9Y4X3 112 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 PTGDR2Q9Y5Y4 395 aa13.84□□□□□ -0.19
USP39-217ENST00000491659 NBPF19A0A087WUL8 3843 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 MYO1GB0I1T2 1018 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 RGS16O15492 202 aaPredicted RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 PLOD3O60568 738 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 ERN1O75460 977 aaKnown RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 JUNP05412 331 aaKnown RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 CHRNGP07510 517 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 ABCB1P08183 1280 aaPredicted RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 GRNP28799 593 aaKnown RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 KRT20P35900 424 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 SERPINB5P36952 375 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 CASP3P42574 277 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 RPL38P63173 70 aaKnown RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 ZNF155Q12901 538 aaPredicted RBP13.83□□□□□ -0.2
USP39-217ENST00000491659 EMC4Q5J8M3 183 aa13.83□□□□□ -0.2
USP39-217ENST00000491659 ZNF585AQ6P3V2 769 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms