RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 OR52E8Q6IFG1 317 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 TMEM81Q6P7N7 255 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 NUP54Q7Z3B4 507 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 IFNEQ86WN2 208 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 WDSUB1Q8N9V3 476 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 OR7G1Q8NGA0 311 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 UBTD2Q8WUN7 234 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 CTHRC1Q96CG8 243 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 STARD4Q96DR4 205 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 UBXN10Q96LJ8 280 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 FAM111AQ96PZ2 611 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 HS3ST6Q96QI5 342 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 PIGQQ9BRB3 760 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 GSX2Q9BZM3 304 aa12.66□□□□□ -0.38
VARS-227ENST00000489979 CXorf49A8MYA2 514 aaPredicted RBP12.65□□□□□ -0.38
VARS-227ENST00000489979 UBXN8O00124 270 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 CRLF1O75462 422 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 CBR3O75828 277 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 EPB42P16452 691 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 NAGAP17050 411 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 S1PR1P21453 382 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 NT5EP21589 574 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 CNTFP26441 200 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 PHEXP78562 749 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 ILF2Q12905 390 aaKnown RBP12.65□□□□□ -0.38
VARS-227ENST00000489979 ZKSCAN8Q15776 578 aaPredicted RBP12.65□□□□□ -0.38
VARS-227ENST00000489979 C6orf163Q5TEZ5 329 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 VWA1Q6PCB0 445 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 ZNF474Q6S9Z5 364 aaPredicted RBP12.65□□□□□ -0.38
VARS-227ENST00000489979 ZNF550Q7Z398 422 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 P4HA3Q7Z4N8 544 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 TEX9Q8N6V9 391 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 CNEP1R1Q8N9A8 125 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 STAG3L4Q8TBR4 150 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 OMA1Q96E52 524 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 GPR22Q99680 433 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 TAS2R10Q9NYW0 307 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 EHD3Q9NZN3 535 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 TSC22D4Q9Y3Q8 395 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 PCDHGA11Q9Y5H2 935 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 CUBNO60494 3623 aa12.65□□□□□ -0.38
VARS-227ENST00000489979 MXRA5Q9NR99 2828 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 PRAMEF25A6NGN4 478 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 E7ESA3 106 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 HCRTR2O43614 444 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 UGT2B11O75310 529 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 SEC31AO94979 1220 aaKnown RBP12.64□□□□□ -0.39
VARS-227ENST00000489979 LOXP28300 417 aaPredicted RBP12.64□□□□□ -0.39
VARS-227ENST00000489979 CCKARP32238 428 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 UGT2B10P36537 528 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 PCYT1AP49585 367 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 XKP51811 444 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 CLDN18P56856 261 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 RAB10P61026 200 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 PLCXD2Q0VAA5 305 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 DLG1Q12959 904 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 SNTA1Q13424 505 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 CUL3Q13618 768 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 LIPJQ5W064 366 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 AAGABQ6PD74 315 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 BTLAQ7Z6A9 289 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 ISCA2Q86U28 154 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 NUDT13Q86X67 352 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 LRRC8AQ8IWT6 810 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 ZBED8Q8IZ13 594 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 OR4K14Q8NGD5 310 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 PGM2Q96G03 612 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 ZC3HAV1LQ96H79 300 aaKnown RBP12.64□□□□□ -0.39
VARS-227ENST00000489979 MARK4Q96L34 752 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 SFXN2Q96NB2 322 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 ATOH8Q96SQ7 321 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 RBBP8Q99708 897 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 ITPAQ9BY32 194 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 OPN3Q9H1Y3 402 aaPredicted RBP12.64□□□□□ -0.39
VARS-227ENST00000489979 TXNDC16Q9P2K2 825 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 DLGAP4Q9Y2H0 992 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 ANGPTL3Q9Y5C1 460 aa12.64□□□□□ -0.39
VARS-227ENST00000489979 H0YIV9 168 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 TP73O15350 636 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 KERAO60938 352 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 CRHP06850 196 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 CPMP14384 443 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 NID1P14543 1247 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 POU2F1P14859 743 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 ZNF708P17019 499 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 TCEA1P23193 301 aaKnown RBP12.63□□□□□ -0.39
VARS-227ENST00000489979 SRD5A2P31213 254 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 NEK2P51955 445 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 EXOSC7Q15024 291 aaKnown RBP12.63□□□□□ -0.39
VARS-227ENST00000489979 CPSF6Q16630 551 aaKnown RBP eCLIP12.63□□□□□ -0.39
VARS-227ENST00000489979 FAM111BQ6SJ93 734 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 PLEKHM3Q6ZWE6 761 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 PLCZ1Q86YW0 608 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 KLHL7Q8IXQ5 586 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 SLC35F6Q8N357 371 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 CDKL2Q92772 493 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 REPS1Q96D71 796 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 LCORQ96JN0 433 aaPredicted RBP12.63□□□□□ -0.39
VARS-227ENST00000489979 CPNE1Q99829 537 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 TRIM31Q9BZY9 425 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms