RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 WIPI1Q5MNZ9 446 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 DCST1Q5T197 706 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 C10orf62Q5T681 223 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 SLC30A6Q6NXT4 461 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 PRSS57Q6UWY2 283 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 NUP54Q7Z3B4 507 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 CROCCP2Q86T23 111 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 TBC1D1Q86TI0 1168 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 NUDT13Q86X67 352 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 TEX9Q8N6V9 391 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 FAM83FQ8NEG4 500 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 OR4K14Q8NGD5 310 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 OR1J4Q8NGS1 313 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 EXT2Q93063 718 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 WNT2BQ93097 391 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 SMR3AQ99954 134 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 RBM24Q9BX46 236 aaKnown RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 FUT8Q9BYC5 575 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 ACBD3Q9H3P7 528 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 PIGMQ9H3S5 423 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 ARGLU1Q9NWB6 273 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 ADAM29Q9UKF5 820 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 EXO1Q9UQ84 846 aaKnown RBP11.86□□□□□ -0.51
HDAC6-227ENST00000485102 CFL2Q9Y281 166 aa11.86□□□□□ -0.51
HDAC6-227ENST00000485102 RTTNQ86VV8 2226 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 A8MXE2 369 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 SNPHO15079 494 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ACOX3O15254 700 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 PPM1BO75688 479 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 CBR3O75828 277 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 CT62P0C5K7 136 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 GPX3P22352 226 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 GCKP35557 465 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 SLCO1A2P46721 670 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 PIK3CGP48736 1102 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 AGFG1P52594 562 aaKnown RBP11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ALDH18A1P54886 795 aaKnown RBP11.85□□□□□ -0.51
HDAC6-227ENST00000485102 MAP4K2Q12851 820 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 FOXF2Q12947 444 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ENPP6Q6UWR7 440 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 CLEC9AQ6UXN8 241 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 CAPN12Q6ZSI9 719 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 RAPH1Q70E73 1250 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 HGDQ93099 445 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 UCN3Q969E3 161 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 NXNL1Q96CM4 212 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 SERPINI1Q99574 410 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 OR2B2Q9GZK3 357 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 NXF5Q9H1B4 397 aaKnown RBP11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ANKZF1Q9H8Y5 726 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ACTR8Q9H981 624 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 PRM3Q9NNZ6 103 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 GALNT8Q9NY28 637 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 RAB21Q9UL25 225 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ACOT9Q9Y305 439 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 MRPS18CQ9Y3D5 142 aaKnown RBP11.85□□□□□ -0.51
HDAC6-227ENST00000485102 ANGPTL3Q9Y5C1 460 aa11.85□□□□□ -0.51
HDAC6-227ENST00000485102 TNPO3Q9Y5L0 923 aaKnown RBP11.85□□□□□ -0.51
HDAC6-227ENST00000485102 A0A1W2PS29 197 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 SH3D21A4FU49 640 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 ICOSLGO75144 302 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CPMP14384 443 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 PORP16435 677 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-227ENST00000485102 KRT15P19012 456 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 SOX18P35713 384 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 GMPRP36959 345 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 PTGDSP41222 190 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 SERPINB9P50453 376 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 XKP51811 444 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 GFRA1P56159 465 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 GPX6P59796 221 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 MGAT2Q10469 447 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 ACAP2Q15057 778 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 TOMM20Q15388 145 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CPSF6Q16630 551 aaKnown RBP eCLIP11.84□□□□□ -0.51
HDAC6-227ENST00000485102 ERCC6LQ2NKX8 1250 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CMC1Q7Z7K0 106 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CENPLQ8N0S6 344 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-227ENST00000485102 TRPC4APQ8TEL6 797 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CAVIN3Q969G5 261 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 PIGTQ969N2 578 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CTHRC1Q96CG8 243 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 COX4I2Q96KJ9 171 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 TUBA1CQ9BQE3 449 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 G6PC3Q9BUM1 346 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CDC42EP4Q9H3Q1 356 aaKnown RBP11.84□□□□□ -0.51
HDAC6-227ENST00000485102 IPPKQ9H8X2 491 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CLCF1Q9UBD9 225 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 NDRG3Q9UGV2 375 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 ZNF639Q9UID6 485 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 CES1P1Q9UKY3 287 aa11.84□□□□□ -0.51
HDAC6-227ENST00000485102 DSCAMO60469 2012 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 CCDC151A5D8V7 595 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 GNB5O14775 395 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 MSTNO14793 375 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 CASKO14936 926 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 TO15178 435 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 ATP1B1P05026 303 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 CRHP06850 196 aa11.83□□□□□ -0.52
HDAC6-227ENST00000485102 INHBAP08476 426 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms