RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SALL1Q9NSC2 1324 aa4.46□□□□□ -1.7
CCDC88A-210ENST00000468534 RAB19A4D1S5 217 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NEMP2A6NFY4 417 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 FBLL1A6NHQ2 334 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 E5RI56 91 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TEX46H3BTG2 121 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 PDXKO00764 312 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TOX3O15405 576 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 PFKFB2O60825 505 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 LRP3O75074 770 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 BCAS1O75363 584 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 GPC4O75487 556 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CREG1O75629 220 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TM7SF2O76062 418 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CNTN5O94779 1100 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 BRI3O95415 125 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CA3P07451 260 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TRIM49P0CI25 452 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TRIM49CP0CI26 452 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 DBTP11182 482 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 VPREB1P12018 145 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ITGA2P17301 1181 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TPSB2P20231 275 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 M6PRP20645 277 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 EDN2P20800 178 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 MAGP20916 626 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 GSTM3P21266 225 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SYT1P21579 422 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CMA1P23946 247 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CCNE1P24864 410 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 MT3P25713 68 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 DPP4P27487 766 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 GJC1P36383 396 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC26A3P40879 764 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 PTGFRP43088 359 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NPBWR1P48145 328 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TGM4P49221 684 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NDST2P52849 883 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 PLK1P53350 603 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NLRP11P59045 1033 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 RAB4BP61018 213 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 REEP5Q00765 189 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF33AQ06730 810 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SCRN3Q0VDG4 424 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 HSPB3Q12988 150 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 STX3Q13277 289 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 MADCAM1Q13477 382 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NAB1Q13506 487 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CUL3Q13618 768 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 GK2Q14410 553 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 PDK2Q15119 407 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TPSAB1Q15661 275 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CARTPTQ16568 116 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 COQ5Q5HYK3 327 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 KIAA1755Q5JYT7 1200 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TCHHL1Q5QJ38 904 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 WASHC2DQ5SRD0 308 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ENPP7Q6UWV6 458 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM159AQ6UWV7 190 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 LRRC74BQ6ZQY2 392 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 PLEKHG7Q6ZR37 379 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CCDC121Q6ZUS5 278 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SSX9Q7RTT3 188 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 C16orf62Q7Z3J2 963 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SCD5Q86SK9 330 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 LONP2Q86WA8 852 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC26A11Q86WA9 606 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CDK20Q8IZL9 346 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 C1orf87Q8N0U7 546 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ANKRD13CQ8N6S4 541 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CYB561A3Q8NBI2 242 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 FAM83FQ8NEG4 500 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 OR5T3Q8NGG3 340 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 OR51L1Q8NGJ5 315 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 OR4A16Q8NH70 328 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 DTD1Q8TEA8 209 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF473Q8WTR7 871 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 U2AF1L4Q8WU68 220 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NRGNQ92686 78 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SEMA4DQ92854 862 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CEP170P1Q96L14 293 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TECTBQ96PL2 329 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 TAAR1Q96RJ0 339 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF347Q96SE7 839 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 OMDQ99983 421 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 HSD17B14Q9BPX1 270 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NAT9Q9BTE0 207 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 ELOVL6Q9H5J4 265 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC38A10Q9HBR0 1119 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 DPP3Q9NY33 737 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 CTNNAL1Q9UBT7 734 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 NARFQ9UHQ1 456 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 MAN1B1Q9UKM7 699 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 FOXJ3Q9UPW0 622 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 EXOGQ9Y2C4 368 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 SH3GLB1Q9Y371 365 aa4.45□□□□□ -1.7
CCDC88A-210ENST00000468534 METTL21EPA6NDL7 271 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 DUXAA6NLW8 204 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 LRRN3E7EW58 273 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PPIAL4DF5H284 164 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms