RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 UAP1Q16222 522 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-204ENST00000448905 SHEQ5VZ18 495 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 MILR1Q7Z6M3 343 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 CENPLQ8N0S6 344 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-204ENST00000448905 C18orf12Q96KH6 178 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 NTMT1Q9BV86 223 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 FAIM2Q9BWQ8 316 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 NXF5Q9H1B4 397 aaKnown RBP12.12□□□□□ -0.47
HMGB3-204ENST00000448905 VPS11Q9H270 941 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 GSX1Q9H4S2 264 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-204ENST00000448905 PLEKHF2Q9H8W4 249 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 DLL4Q9NR61 685 aa12.12□□□□□ -0.47
HMGB3-204ENST00000448905 BEX4Q9NWD9 120 aaPredicted RBP12.12□□□□□ -0.47
HMGB3-204ENST00000448905 LRRC14BA6NHZ5 514 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 ABCB7O75027 752 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 SIX3O95343 332 aaPredicted RBP12.11□□□□□ -0.47
HMGB3-204ENST00000448905 ATP1B1P05026 303 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 CT62P0C5K7 136 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 S1PR1P21453 382 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 GPX3P22352 226 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 HOXC12P31275 282 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 KRT20P35900 424 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 FEN1P39748 380 aaKnown RBP12.11□□□□□ -0.47
HMGB3-204ENST00000448905 PPICP45877 212 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 PSPHP78330 225 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 NKX6-1P78426 367 aaPredicted RBP12.11□□□□□ -0.47
HMGB3-204ENST00000448905 IRF9Q00978 393 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 SGO1Q5FBB7 561 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 SLC48A1Q6P1K1 146 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 LUZP2Q86TE4 346 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 TRIM42Q8IWZ5 723 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 MMP21Q8N119 569 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 PTGR2Q8N8N7 351 aaPredicted RBP12.11□□□□□ -0.47
HMGB3-204ENST00000448905 FBXO25Q8TCJ0 367 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 NTNG2Q96CW9 530 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 OMA1Q96E52 524 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 PHF21BQ96EK2 531 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 CDK15Q96Q40 435 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 UCN2Q96RP3 112 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 OSBPL11Q9BXB4 747 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 MRPL1Q9BYD6 325 aaKnown RBP12.11□□□□□ -0.47
HMGB3-204ENST00000448905 KCNF1Q9H3M0 494 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 TAS2R10Q9NYW0 307 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 SNX6Q9UNH7 406 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 SLC12A4Q9UP95 1085 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 PCDHA9Q9Y5H5 950 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 ITPR3Q14573 2671 aa12.11□□□□□ -0.47
HMGB3-204ENST00000448905 PHF3Q92576 2039 aaKnown RBP12.1□□□□□ -0.47
HMGB3-204ENST00000448905 SH3D21A4FU49 640 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 C2orf72A6NCS6 295 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 KDM4EB2RXH2 506 aaPredicted RBP12.1□□□□□ -0.47
HMGB3-204ENST00000448905 OR7A17O14581 309 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 SNPHO15079 494 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 REM1O75628 298 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 MRPS22P82650 360 aaKnown RBP12.1□□□□□ -0.47
HMGB3-204ENST00000448905 PRICKLE4Q2TBC4 344 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 IFNEQ86WN2 208 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 PLCZ1Q86YW0 608 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 P3H2Q8IVL5 708 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 SAMD14Q8IZD0 417 aaPredicted RBP12.1□□□□□ -0.47
HMGB3-204ENST00000448905 METTL4Q8N3J2 472 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 C9orf106Q8NAJ2 232 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 ADCY4Q8NFM4 1077 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 SMPDL3BQ92485 455 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 INTS12Q96CB8 462 aaKnown RBP12.1□□□□□ -0.47
HMGB3-204ENST00000448905 COL21A1Q96P44 957 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 TUBA1CQ9BQE3 449 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 LRRC1Q9BTT6 524 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 GRPEL1Q9HAV7 217 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 SERHLQ9NQF3 203 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 MAPRE3Q9UPY8 281 aa12.1□□□□□ -0.47
HMGB3-204ENST00000448905 MRPS18CQ9Y3D5 142 aaKnown RBP12.1□□□□□ -0.47
HMGB3-204ENST00000448905 MTORP42345 2549 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 ZNF407Q9C0G0 2248 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 A0A1W2PS29 197 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 PRAMEF25A6NGN4 478 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 OR6C70A6NIJ9 312 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 STX16-NPEPL1H3BU86 382 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 STX16O14662 325 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 ESRRBO95718 433 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 OTCP00480 354 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 HRGP04196 525 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 INHBBP09529 407 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 COL6A2P12110 1019 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 CASQ1P31415 396 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 EEFSECP57772 596 aaKnown RBP12.09□□□□□ -0.47
HMGB3-204ENST00000448905 TRA2BP62995 288 aaKnown RBP12.09□□□□□ -0.47
HMGB3-204ENST00000448905 LTBQ06643 244 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 EFR3AQ14156 821 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 NNATQ16517 81 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 BCL2A1Q16548 175 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 TSNAXIP1Q2TAA8 658 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 OR2A2Q6IF42 318 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 FAM111BQ6SJ93 734 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 TAOK1Q7L7X3 1001 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 COMMD6Q7Z4G1 85 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 P4HA3Q7Z4N8 544 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 PIAS4Q8N2W9 510 aaPredicted RBP12.09□□□□□ -0.47
HMGB3-204ENST00000448905 WFDC11Q8NEX6 87 aa12.09□□□□□ -0.47
HMGB3-204ENST00000448905 OR52B6Q8NGF0 335 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms