RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HEPHL1Q6MZM0 1159 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF605Q86T29 641 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 LACC1Q8IV20 430 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 FAM181AQ8N9Y4 354 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 OR4C15Q8NGM1 316 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 BBS10Q8TAM1 723 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 CDS1Q92903 461 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 ZG16BQ96DA0 208 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 NRBF2Q96F24 287 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF607Q96SK3 696 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 CUTCQ9NTM9 273 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 GIN1Q9NXP7 522 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PDP1Q9P0J1 537 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-202ENST00000372405 SEC14L3Q9UDX4 400 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 SCOCQ9UIL1 159 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 PCDHGB3Q9Y5G1 929 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 MAU2Q9Y6X3 613 aa12.89□□□□□ -0.35
PTPRF-202ENST00000372405 DSPPQ9NZW4 1301 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 H0YAE9 185 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 DNAJB5O75953 348 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ALBP02768 609 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 SMIM18P0DKX4 95 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ETS2P15036 469 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 S1PR1P21453 382 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 HOXD12P35452 270 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 POLR2IP36954 125 aaKnown RBP12.88□□□□□ -0.35
PTPRF-202ENST00000372405 SKP1P63208 163 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 IGLV3-21P80748 117 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-202ENST00000372405 KCNC4Q03721 635 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 CHRNEQ04844 493 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 LPAL2Q16609 132 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 FAM214AQ32MH5 1076 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 GPAT3Q53EU6 434 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 TRIM61Q5EBN2 209 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 KDM4DQ6B0I6 523 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 NIPAL1Q6NVV3 410 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 RBM45Q8IUH3 476 aaKnown RBP12.88□□□□□ -0.35
PTPRF-202ENST00000372405 EID2Q8N6I1 236 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ZBTB44Q8NCP5 570 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 OR51Q1Q8NH59 317 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-202ENST00000372405 RDH12Q96NR8 316 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF347Q96SE7 839 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF768Q9H5H4 540 aaKnown RBP12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ADAP2Q9NPF8 381 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 BATF3Q9NR55 127 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 EXD2Q9NVH0 621 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ENPP4Q9Y6X5 453 aa12.88□□□□□ -0.35
PTPRF-202ENST00000372405 ASCC3Q8N3C0 2202 aaKnown RBP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 A0A0G2JPF8 293 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 EME2A4GXA9 379 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 A6NHS1 94 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 HNRNPCL2B2RXH8 293 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 HNRNPCL3B7ZW38 293 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 H0YIG0 161 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF749O43361 778 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 FCMRO60667 390 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CTNSO60931 367 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SERPINB7O75635 380 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CBX7O95931 251 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 MSL3P1P0C860 447 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 HNRNPCL4P0DMR1 293 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 MAP3K8P41279 467 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 AVPR1BP47901 424 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 LIMS1P48059 325 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ARL4DP49703 201 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PDX1P52945 283 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CDH12P55289 794 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CCL7P80098 99 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SLC13A2Q13183 592 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 KCNAB2Q13303 367 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SQSTM1Q13501 440 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PRAMEF8Q5VWM4 474 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PRAMEF7Q5VXH5 474 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 FAHD1Q6P587 224 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 TMEM71Q6P5X7 295 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 TTLL10Q6ZVT0 673 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF595Q8IYB9 648 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 OR52J3Q8NH60 311 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ADAMTS15Q8TE58 950 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SLC9A6Q92581 669 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF501Q96CX3 271 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF354BQ96LW1 612 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 TRNT1Q96Q11 434 aaKnown RBP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PIP5K1AQ99755 562 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 BTBD2Q9BX70 525 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SMOC1Q9H4F8 434 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF696Q9H7X3 374 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CXorf21Q9HAI6 301 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ACER3Q9NUN7 267 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 FAM118AQ9NWS6 357 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 DHCR7Q9UBM7 475 aaKnown RBP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 DPPA5A6NC42 116 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 A8MVJ9 347 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 HRKO00198 91 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 ADAMDEC1O15204 470 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SMNDC1O75940 238 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 IFNW1P05000 195 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 IFI6P09912 130 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SP9P0CG40 484 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms