RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 DNAJC11Q9NVH1 559 aa9.55□□□□□ -0.88
SYNE1-203ENST00000354674 SLC9A8Q9Y2E8 581 aa9.55□□□□□ -0.88
SYNE1-203ENST00000354674 U3KQ87 197 aa9.55□□□□□ -0.88
SYNE1-203ENST00000354674 VCANP13611 3396 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 KCNE1BA0A087WTH5 132 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 OR4F21O95013 312 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TNFP01375 233 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 HSD17B2P37059 387 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 BLVRAP53004 296 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PER3P56645 1201 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ZNF273Q14593 569 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 XKR7Q5GH72 579 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 SLC6A19Q695T7 634 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 CREB3L2Q70SY1 520 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 THOC6Q86W42 341 aaKnown RBP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ATG16L2Q8NAA4 619 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 SLC37A3Q8NCC5 494 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TWIST2Q8WVJ9 160 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TMEM125Q96AQ2 219 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 DUS3LQ96G46 650 aaKnown RBP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TWSG1Q9GZX9 223 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ATG10Q9H0Y0 220 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 MVB12BQ9H7P6 319 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 GPRC5BQ9NZH0 403 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TBC1D29Q9UFV1 150 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 BAIAP2Q9UQB8 552 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ERVK-19Q9WJR5 959 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 SLC22A14Q9Y267 594 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ZNF451Q9Y4E5 1061 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ORC6Q9Y5N6 252 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 M0R082 166 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 UGDHO60701 494 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PRAMEF4O60810 478 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 CD38P28907 300 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PNLIPRP1P54315 467 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TAP2Q03519 686 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 EXOSC2Q13868 293 aaKnown RBP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 RPE65Q16518 533 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PDZK1Q5T2W1 519 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PRAMEF9Q5VWM5 478 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 FAM92BQ6ZTR7 304 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 LARP4Q71RC2 724 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PLCZ1Q86YW0 608 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 BOLLQ8N9W6 283 aaKnown RBP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 C19orf60Q96EN9 201 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 C12orf66Q96MD2 445 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 CDK15Q96Q40 435 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 APOL4Q9BPW4 351 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 GTPBP2Q9BX10 602 aaKnown RBP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 PITHD1Q9GZP4 211 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-203ENST00000354674 ING3Q9NXR8 418 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 POLG2Q9UHN1 485 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 TPRKBQ9Y3C4 175 aa9.54□□□□□ -0.88
SYNE1-203ENST00000354674 M0R296 226 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RASGRP1O95267 797 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RETP07949 1114 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 ZNF806P0C7X5 589 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 GPX3P22352 226 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 UFM1P61960 85 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 HYAL2Q12891 473 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 NAE1Q13564 534 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RBMS2Q15434 407 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 IQCCQ4KMZ1 466 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TMPRSS11AQ6ZMR5 421 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 PARGQ86W56 976 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 LNX2Q8N448 690 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 DEFB119Q8N690 84 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CCL4L1Q8NHW4 92 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CA5BP1Q8WTZ4 195 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RBPMSQ93062 196 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SLC38A4Q969I6 547 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 HSPA12BQ96MM6 686 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 ITPAQ9BY32 194 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RBCK1Q9BYM8 510 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SLC29A3Q9BZD2 475 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 OSGEPL1Q9H4B0 414 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TM9SF3Q9HD45 589 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 DIABLOQ9NR28 239 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SLC22A11Q9NSA0 550 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 HEBP2Q9Y5Z4 205 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 MUC3AQ02505 3323 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SERTM1A2A2V5 107 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 F8W036 122 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 PIP5K1BO14986 540 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RGS11O94810 467 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CLDN9O95484 217 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 EML2O95834 649 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 PRR35P0CG20 571 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 NPPBP16860 134 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 AK4P27144 223 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 NUP62P37198 522 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 DGKQP52824 942 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SLC35A2P78381 396 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 DEFA5Q01523 94 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 GPR19Q15760 415 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SPATS1Q496A3 300 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 FAM98BQ52LJ0 330 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SYT6Q5T7P8 510 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SETD7Q8WTS6 366 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 WDR34Q96EX3 536 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms