RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 ARSIQ5FYB1 569 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ZNF572Q7Z3I7 529 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 SLC15A4Q8N697 577 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 OR4C5Q8NGB2 326 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CARS2Q9HA77 564 aaKnown RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 KCNQ5Q9NR82 932 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 HEBP1Q9NRV9 189 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 PLA2R1Q13018 1463 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CIDEAO60543 219 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 OR12D1P0DN82 309 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 PFKLP17858 780 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 ECHDC3Q96DC8 303 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 NUS1Q96E22 293 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 GALPQ9UBC7 116 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 B3GNT3Q9Y2A9 372 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 FBXO7Q9Y3I1 522 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 URGCP-MRPS24S4R325 110 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 A0A087WZY1 265 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 PITPNBP48739 271 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 PTTG1IPP53801 180 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 TAS2R30P59541 319 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 RABL3Q5HYI8 236 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 SSX7Q7RTT5 188 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 OR52E2Q8NGJ4 325 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 ZNRF4Q8WWF5 429 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 SMOXQ9NWM0 555 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 PLAGL1Q9UM63 463 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 DLGAP4Q9Y2H0 992 aa12.27□□□□□ -0.44
USP47-202ENST00000339865 TTC24A2A3L6 582 aaPredicted RBP12.27□□□□□ -0.45
USP47-202ENST00000339865 F7P08709 466 aaPredicted RBP12.27□□□□□ -0.45
USP47-202ENST00000339865 SLC36A3Q495N2 470 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 UNQ6126/PRO20091Q6UXV3 157 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 GPR142Q7Z601 462 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.27□□□□□ -0.45
USP47-202ENST00000339865 CMIPQ8IY22 773 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 LINC01599Q8WXQ3 324 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 THOC3Q96J01 351 aaKnown RBP12.27□□□□□ -0.45
USP47-202ENST00000339865 MCHR1Q99705 422 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 LUZP4Q9P127 313 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 ASB3Q9Y575 518 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 CAMSAP1Q5T5Y3 1602 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 TRAV18A0A075B6X5 111 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 TRAPPC13A5PLN9 417 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 MGAT3Q09327 533 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 NOGQ13253 232 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 KCNJ11Q14654 390 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 TPRA1Q86W33 373 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 CCDC116Q8IYX3 515 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 FNDC9Q8TBE3 224 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 TM9SF4Q92544 642 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 UHRF2Q96PU4 802 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 TAC3Q9UHF0 121 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 AK6Q9Y3D8 172 aaKnown RBP12.27□□□□□ -0.45
USP47-202ENST00000339865 DVL2O14641 736 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 TOR1AO14656 332 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 PTTG1O95997 202 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 UBBP0CG47 229 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 UBCP0CG48 685 aaKnown RBP12.27□□□□□ -0.45
USP47-202ENST00000339865 TRIM23P36406 574 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 GPR4P46093 362 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 BRCC3P46736 316 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 APOFQ13790 326 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 LRRC57Q8N9N7 239 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 SYT14Q8NB59 555 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 SLC30A7Q8NEW0 376 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 OR52H1Q8NGJ2 320 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 LMX1AQ8TE12 382 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 SMIM12Q96EX1 92 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 LRR1Q96L50 414 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 CRB3Q9BUF7 120 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 SEMA6CQ9H3T2 930 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 KIF25Q9UIL4 384 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 MAKP20794 623 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 SLAMF1Q13291 335 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 CLINT1Q14677 625 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 SPANXN4Q5MJ08 99 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 NPAS3Q8IXF0 933 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 HHIPL1Q96JK4 782 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 WASH6PQ9NQA3 447 aa12.27□□□□□ -0.45
USP47-202ENST00000339865 ANKUB1A6NFN9 424 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 HAS3O00219 553 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 PRAMEF2O60811 474 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 FGF19O95750 216 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 TNFP01375 233 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 PRSS3P35030 304 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 ARL16Q0P5N6 197 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 SHFQ7M4L6 423 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 LIN7CQ9NUP9 197 aaKnown RBP12.26□□□□□ -0.45
USP47-202ENST00000339865 ZNF736B4DX44 427 aaPredicted RBP12.26□□□□□ -0.45
USP47-202ENST00000339865 PAX6P26367 422 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 GABRA3P34903 492 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 HNF4GQ14541 408 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 C6orf141Q5SZD1 244 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 TLCD1Q96CP7 247 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 PGAP3Q96FM1 320 aaPredicted RBP12.26□□□□□ -0.45
USP47-202ENST00000339865 SSU72Q9NP77 194 aaKnown RBP12.26□□□□□ -0.45
USP47-202ENST00000339865 NIT2Q9NQR4 276 aa12.26□□□□□ -0.45
USP47-202ENST00000339865 EIF2B3Q9NR50 452 aaKnown RBP12.26□□□□□ -0.45
USP47-202ENST00000339865 NUP153P49790 1475 aaKnown RBP12.26□□□□□ -0.45
USP47-202ENST00000339865 OR2T1O43869 369 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms