RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PCDH1Q08174 1060 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 TMEM115Q12893 351 aaPredicted RBP10.34□□□□□ -0.75
LSM3-201ENST00000306024 EXOSC2Q13868 293 aaKnown RBP10.34□□□□□ -0.75
LSM3-201ENST00000306024 VN1R5Q7Z5H4 357 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 SYT12Q8IV01 421 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 IL17RCQ8NAC3 791 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 TTLQ8NG68 377 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 EEF1AKMT1Q8WVE0 214 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 C12orf57Q99622 126 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 SORBS1Q9BX66 1292 aaKnown RBP10.34□□□□□ -0.75
LSM3-201ENST00000306024 NLNQ9BYT8 704 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 FZD3Q9NPG1 666 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 CLEC4AQ9UMR7 237 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 ZNF175Q9Y473 711 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 PCDHGA6Q9Y5G7 932 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 CXorf51AA0A1B0GTR3 108 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 ENGP17813 658 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 MAPK1P28482 360 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 LCN1P31025 176 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 CRATP43155 626 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 TNK1Q13470 666 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 ABRAXAS2Q15018 415 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.34□□□□□ -0.75
LSM3-201ENST00000306024 TADA1Q96BN2 335 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 ECHDC3Q96DC8 303 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 HHIPQ96QV1 700 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 MCCC1Q96RQ3 725 aaPredicted RBP10.34□□□□□ -0.75
LSM3-201ENST00000306024 PCTPQ9UKL6 214 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 CLCA2Q9UQC9 943 aa10.34□□□□□ -0.75
LSM3-201ENST00000306024 LAMA2P24043 3122 aaKnown RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 POM121CA8CG34 1229 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 SH3BGRLO75368 114 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 VSX2P58304 361 aaPredicted RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 SMAD2Q15796 467 aaKnown RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 OR4F3Q6IEY1 312 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 KIAA1211LQ6NV74 962 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 LETMD1Q6P1Q0 360 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 RTL4Q6ZR62 310 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 Q6ZSR9 355 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 UBE2R2Q712K3 238 aaPredicted RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 DGLUCYQ7Z3D6 616 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 PM20D2Q8IYS1 436 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 RAB42Q8N4Z0 105 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 DEFB119Q8N690 84 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 OR2T35Q8NGX2 323 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 BTN2A2Q8WVV5 523 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 SLC9A6Q92581 669 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 CIDECQ96AQ7 238 aaPredicted RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 NXPE2Q96DL1 559 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 DTD2Q96FN9 168 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 HRASLS5Q96KN8 279 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 LMLNQ96KR4 655 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 ATOH8Q96SQ7 321 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 DPH2Q9BQC3 489 aaPredicted RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 ASF1AQ9Y294 204 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 LINC00862A6NCI5 91 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 L7N2F9 121 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 MPZL2O60487 215 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 ANXA5P08758 320 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 RAB3AP20336 220 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 CAV3P56539 151 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 PPP3R1P63098 170 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 KLHL22Q53GT1 634 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 DEF8Q6ZN54 512 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 GPALPP1Q8IXQ4 340 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 DENND6BQ8NEG7 585 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 TRMT61AQ96FX7 289 aaKnown RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 MED8Q96G25 268 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 APOLD1Q96LR9 279 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 NELL2Q99435 816 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 SLC17A9Q9BYT1 436 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 GSX2Q9BZM3 304 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 CDCP1Q9H5V8 836 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 TBC1D17Q9HA65 648 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 NUDT15Q9NV35 164 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 NFKBIL1Q9UBC1 381 aaPredicted RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 TRPM6Q9BX84 2022 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 DOCK8Q8NF50 2099 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 FDXRP22570 491 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 HNMTP50135 292 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 B2MP61769 119 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 GRM7Q14831 915 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 SWI5Q1ZZU3 235 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 C17orf107Q6ZR85 190 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 NRSN1Q8IZ57 195 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 GHDCQ8N2G8 530 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 OR7G3Q8NG95 312 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 RLN3Q8WXF3 142 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 ZNF382Q96SR6 550 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 SDHCQ99643 169 aaPredicted RBP10.33□□□□□ -0.76
LSM3-201ENST00000306024 MND1Q9BWT6 205 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 GPR174Q9BXC1 333 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 FOXQ1Q9C009 403 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 PRDM6Q9NQX0 595 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 SH3BP4Q9P0V3 963 aa10.33□□□□□ -0.76
LSM3-201ENST00000306024 PRSS44E7EML9 344 aa10.32□□□□□ -0.76
LSM3-201ENST00000306024 BET1O15155 118 aa10.32□□□□□ -0.76
LSM3-201ENST00000306024 SLC43A1O75387 559 aa10.32□□□□□ -0.76
LSM3-201ENST00000306024 POP7O75817 140 aaKnown RBP10.32□□□□□ -0.76
LSM3-201ENST00000306024 SLC35G4P0C7Q5 338 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms