RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 EFCAB7A8K855 629 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 RGS10O43665 173 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 PRAMEF4O60810 478 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SLC35E2P0CK97 266 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 IST1P53990 364 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 LTB4RQ15722 352 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ZSWIM7Q19AV6 140 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 PRAMEF9Q5VWM5 478 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 FRMPD2BQ6IN97 320 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF544Q6NX49 715 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM64Q6YI46 380 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 OR5T3Q8NGG3 340 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 NMD3Q96D46 503 aaKnown RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SLC39A1Q9NY26 324 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SLC25A37Q9NYZ2 338 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 KLRF1Q9NZS2 232 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 IRGMA1A4Y4 181 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 CASC3O15234 703 aaKnown RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 HMGN1P05114 100 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ETS2P15036 469 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 CXCR1P25024 350 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SRSF5Q13243 272 aaKnown RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ELOAQ14241 798 aaKnown RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 EXOC3L2Q2M3D2 409 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF425Q6IV72 752 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SHISA6Q6ZSJ9 500 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 KMT5CQ86Y97 462 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 IL22RA1Q8N6P7 574 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 OR5M3Q8NGP4 307 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 CDS1Q92903 461 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ELP4Q96EB1 424 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 VMP1Q96GC9 406 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SH3YL1Q96HL8 342 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 DEPDC7Q96QD5 511 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF300Q96RE9 604 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 TREX2Q9BQ50 279 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 TAPBPLQ9BX59 468 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 TRIM2Q9C040 744 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 AGPAT4Q9NRZ5 378 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 NLGN3Q9NZ94 848 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM5Q9Y2B1 443 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 BTBD3Q9Y2F9 522 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 MMACHCQ9Y4U1 282 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 MCIDASD6RGH6 385 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 NSA2O95478 260 aaKnown RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 SNAP29O95721 258 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 EPHA8P29322 1005 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 DCTP40126 519 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF750Q32MQ0 723 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 FBXO42Q6P3S6 717 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ATP6V1C2Q8NEY4 427 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 THAP3Q8WTV1 239 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ATOH1Q92858 354 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 PINK1Q9BXM7 581 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 YTHDF1Q9BYJ9 559 aaKnown RBP10.89□□□□□ -0.67
VPS4A-201ENST00000254950 HOXD1Q9GZZ0 328 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 ARRDC1-AS1Q9H2J1 176 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 METTL7AQ9H8H3 244 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 POLR1DQ9Y2S0 133 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 EME2A4GXA9 379 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 H0YAE9 185 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 PROM1O43490 865 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 OCM2P0CE71 109 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 OCMP0CE72 109 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 IL18R1Q13478 541 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 KCNAB1Q14722 419 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 SYT16Q17RD7 645 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 TIMM50Q3ZCQ8 353 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 YOD1Q5VVQ6 348 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 SHQ1Q6PI26 577 aaKnown RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 AHSA2Q719I0 299 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 SLC35F3Q8IY50 421 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 GATSQ8NAP1 163 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 OR4C6Q8NH72 309 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 SLC38A5Q8WUX1 472 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 C16orf58Q96GQ5 468 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 NRTNQ99748 197 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 TMEM38AQ9H6F2 299 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 RIMS3Q9UJD0 308 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 PCYT1BQ9Y5K3 369 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 ANKRD28O15084 1053 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 RCBTB2O95199 551 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 FUCA1P04066 466 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 TSPAN19P0C672 248 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 GP1BBP13224 206 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 CD1CP29017 333 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 HSD17B7P56937 341 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 BLMHQ13867 455 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 COX20Q5RI15 118 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 WDR53Q7Z5U6 358 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 IFI44Q8TCB0 444 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 JSRP1Q96MG2 331 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 NODALQ96S42 347 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 LAMA2P24043 3122 aaKnown RBP10.88□□□□□ -0.67
VPS4A-201ENST00000254950 A0A1B0GX78 115 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 FAM227AF5H4B4 570 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 ZNF749O43361 778 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 HCRTR2O43614 444 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 BRINP1O60477 761 aa10.88□□□□□ -0.67
VPS4A-201ENST00000254950 PRAMEF10O60809 474 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms