RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PPP1R3AQ16821 1122 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 HLA-DQA1Q5Y7H0 255 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 AAGABQ6PD74 315 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 C4orf22Q6V702 233 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 CHMP1BQ7LBR1 199 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 LMNTD2Q8IXW0 634 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 CCDC170Q8IYT3 715 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 ST13P4Q8IZP2 240 aaPredicted RBP13.08□□□□□ -0.32
CLN3-249ENST00000636685 WDSUB1Q8N9V3 476 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 CALML6Q8TD86 181 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 RIT1Q92963 219 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 C1orf159Q96HA4 380 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 NODALQ96S42 347 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 TBCDQ9BTW9 1192 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 NTMT1Q9BV86 223 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 OSBPL11Q9BXB4 747 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 ROGDIQ9GZN7 287 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 L2HGDHQ9H9P8 463 aa13.08□□□□□ -0.32
CLN3-249ENST00000636685 BARX1Q9HBU1 254 aaPredicted RBP13.08□□□□□ -0.32
CLN3-249ENST00000636685 PTBP2Q9UKA9 531 aaKnown RBP13.08□□□□□ -0.32
CLN3-249ENST00000636685 A0A1W2PP18 115 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 SYCE3A1L190 88 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 PRAMEF4O60810 478 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 CDH16O75309 829 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 IGHV4-31P0DP07 118 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 HIST1H1TP22492 207 aaPredicted RBP13.07□□□□□ -0.32
CLN3-249ENST00000636685 ABCD3P28288 659 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 NRG3P56975 720 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 LOXL1Q08397 574 aaPredicted RBP13.07□□□□□ -0.32
CLN3-249ENST00000636685 BIKQ13323 160 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 PDAP1Q13442 181 aaKnown RBP13.07□□□□□ -0.32
CLN3-249ENST00000636685 CYP1B1Q16678 543 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 PRAMEF9Q5VWM5 478 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 ANKRD22Q5VYY1 191 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 ARMC3Q5W041 872 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 C18orf63Q68DL7 685 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 SLC30A6Q6NXT4 461 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 STAC2Q6ZMT1 411 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 UBQLNLQ8IYU4 475 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 OR10H5Q8NGA6 315 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 ANP32BQ92688 251 aaKnown RBP13.07□□□□□ -0.32
CLN3-249ENST00000636685 ADIPOR1Q96A54 375 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 SORBS1Q9BX66 1292 aaKnown RBP13.07□□□□□ -0.32
CLN3-249ENST00000636685 REXO2Q9Y3B8 237 aaKnown RBP13.07□□□□□ -0.32
CLN3-249ENST00000636685 RNF115Q9Y4L5 304 aa13.07□□□□□ -0.32
CLN3-249ENST00000636685 MAGEB16A2A368 324 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 SAP18O00422 153 aaKnown RBP13.06□□□□□ -0.32
CLN3-249ENST00000636685 ABCB7O75027 752 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 RHOXF2BP0C7M4 288 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 KRT15P19012 456 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 CNTFP26441 200 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 TBX2Q13207 712 aaPredicted RBP13.06□□□□□ -0.32
CLN3-249ENST00000636685 PGGHGQ32M88 737 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 FAM120AOSQ5T036 256 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 SEL1L2Q5TEA6 688 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 GSTA5Q7RTV2 222 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.06□□□□□ -0.32
CLN3-249ENST00000636685 C2CD4AQ8NCU7 369 aaPredicted RBP13.06□□□□□ -0.32
CLN3-249ENST00000636685 TANKQ92844 425 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 HGDQ93099 445 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 RHBDF1Q96CC6 855 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 HES6Q96HZ4 224 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 VPS39Q96JC1 886 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 SERPINB12Q96P63 405 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 EGFL8Q99944 293 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 FAM167BQ9BTA0 163 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 ACTR6Q9GZN1 396 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 CHODLQ9H9P2 273 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 RNF122Q9H9V4 155 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 KLRF1Q9NZS2 232 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 FBXL2Q9UKC9 423 aa13.06□□□□□ -0.32
CLN3-249ENST00000636685 SLC35F4A4IF30 521 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 NPEPPSL1A6NEC2 478 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 SDR42E2A6NKP2 422 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 H0YC42 278 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 PPM1BO75688 479 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 SCELO95171 688 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 CD8AP01732 235 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 SRD5A2P31213 254 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 SSR2P43308 183 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 TPD52P55327 224 aaPredicted RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 CLDN15P56746 228 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 SARNPP82979 210 aaKnown RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 TNFRSF17Q02223 184 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 ZNF844Q08AG5 666 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 SLAMF1Q13291 335 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 FGFBP1Q14512 234 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 GUSBP1Q15486 140 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 NNATQ16517 81 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 AP5B1Q2VPB7 878 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 FAM174BQ3ZCQ3 159 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 GAS2L3Q86XJ1 694 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 AGGF1Q8N302 714 aaeCLIP13.05□□□□□ -0.32
CLN3-249ENST00000636685 SRFBP1Q8NEF9 429 aaKnown RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 FNDC9Q8TBE3 224 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 PELOQ9BRX2 385 aaKnown RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 TRAF4Q9BUZ4 470 aaPredicted RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 MS4A8Q9BY19 250 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 PITHD1Q9GZP4 211 aaPredicted RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 NXF5Q9H1B4 397 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms