RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NPIPA3F8WFD2 350 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 ADAM10O14672 748 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 HNRNPRO43390 633 aaKnown RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 SUSD5O60279 629 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 SLU7O95391 586 aaKnown RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 IGHG3P01860 377 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 UROSP10746 265 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 GPX3P22352 226 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 ABCD3P28288 659 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 FBXW4P57775 412 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 DUSP2Q05923 314 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 EXOSC7Q15024 291 aaKnown RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 ZNF630Q2M218 657 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 TRILQ7L0X0 811 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 TRIM46Q7Z4K8 759 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 C10orf107Q8IVU9 208 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 CCDC116Q8IYX3 515 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 EXOSC8Q96B26 276 aaKnown RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 CTHRC1Q96CG8 243 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 APOPT1Q96IL0 206 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 JSRP1Q96MG2 331 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 SMC6Q96SB8 1091 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 SECISBP2Q96T21 854 aaKnown RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 SHCBP1LQ9BZQ2 653 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 RUBCNLQ9H714 662 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 RRAGDQ9NQL2 400 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 EHD3Q9NZN3 535 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 B4GALT7Q9UBV7 327 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 PRODH2Q9UF12 536 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 ZNF639Q9UID6 485 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 CNOT11Q9UKZ1 510 aaKnown RBP14.04□□□□□ -0.16
TRIM28-203ENST00000593582 PLLPQ9Y342 182 aa14.04□□□□□ -0.16
TRIM28-203ENST00000593582 A0A1B0GVC2 190 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 BCKDKO14874 412 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 BCAS2O75934 225 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 RSL1D1O76021 490 aaKnown RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 LRATO95237 230 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 CLDN14O95500 239 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 CBX7O95931 251 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 PCSK2P16519 638 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 MPIP34949 423 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 MAN2A2P49641 1150 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 MRPS35P82673 323 aaKnown RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ZNF763Q0D2J5 394 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 LTB4RQ15722 352 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 TRMT12Q53H54 448 aaKnown RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 TMEM198Q66K66 360 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 TMEM211Q6ICI0 200 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 WDR93Q6P2C0 686 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 NCCRP1Q6ZVX7 275 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 TRABD2AQ86V40 505 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 SRRM1Q8IYB3 904 aaKnown RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 PRR22Q8IZ63 422 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 OR52R1Q8NGF1 315 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 CDC26Q8NHZ8 85 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 FAM76AQ8TAV0 307 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ZNF675Q8TD23 568 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 AENQ8WTP8 325 aaKnown RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 MARVELD3Q96A59 401 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ERP27Q96DN0 273 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 HSPBAP1Q96EW2 488 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 LCORQ96JN0 433 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 TRMOQ9BU70 441 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ITPAQ9BY32 194 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ROPN1BQ9BZX4 212 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 NXF5Q9H1B4 397 aaKnown RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 EXO5Q9H790 373 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ZNF703Q9H7S9 590 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 ROPN1Q9HAT0 212 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-203ENST00000593582 PROK2Q9HC23 129 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 SLC35C2Q9NQQ7 365 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 MKS1Q9NXB0 559 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 COQ3Q9NZJ6 369 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 LGALS13Q9UHV8 139 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 DTX4Q9Y2E6 619 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 LIPGQ9Y5X9 500 aa14.03□□□□□ -0.16
TRIM28-203ENST00000593582 TRGV5A0A0B4J1U4 118 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 LRRC3CA6NJW4 275 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 FIGNL2A6NMB9 653 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 AQP7O14520 342 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 ACOX3O15254 700 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 ZNF500O60304 480 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-203ENST00000593582 HCN1O60741 890 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 TRIM13O60858 407 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 TRIM3O75382 744 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-203ENST00000593582 PPM1BO75688 479 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 SNX4O95219 450 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 CELA3AP09093 270 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 RFPL3SP0C7P2 107 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 NAGAP17050 411 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 DDCP20711 480 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 GRNP28799 593 aaKnown RBP14.02□□□□□ -0.17
TRIM28-203ENST00000593582 DCAF7P61962 342 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 C2orf80Q0P641 193 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 DUSP8Q13202 625 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 PCLAFQ15004 111 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 NNATQ16517 81 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 ERCC6LQ2NKX8 1250 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 GXYLT1Q4G148 440 aa14.02□□□□□ -0.17
TRIM28-203ENST00000593582 ZNF628Q5EBL2 1059 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms