RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MARCKSP29966 332 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 SAA4P35542 130 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 FNTAP49354 379 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 PAX2Q02962 417 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 CLPPQ16740 277 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 HFEQ30201 348 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 CMPK2Q5EBM0 449 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 SLC10A5Q5PT55 438 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 UTF1Q5T230 341 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 FHL5Q5TD97 284 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 STOX1Q6ZVD7 989 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 BNIPLQ7Z465 357 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 PYROXD2Q8N2H3 581 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 VN1R17PQ8TDU5 208 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 GTSF1Q8WW33 167 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 P3H4Q92791 437 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 EEF2KMTQ96G04 330 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 PIWIL1Q96J94 861 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 ACCSQ96QU6 501 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 CPXM1Q96SM3 734 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 NAP1L3Q99457 506 aaPredicted RBP3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 FAM173AQ9BQD7 235 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 KRTAP4-3Q9BYR4 195 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 TRIM9Q9C026 710 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 TNMDQ9H2S6 317 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 TIGARQ9NQ88 270 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 IMPAD1Q9NX62 359 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 HMG20BQ9P0W2 317 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 MTRRQ9UBK8 725 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 B4GALT7Q9UBV7 327 aa3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 TDRKHQ9Y2W6 561 aaKnown RBP3.38□□□□□ -1.87
SMCHD1-204ENST00000581226 FER1L5A0AVI2 2057 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 AGRNO00468 2067 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 SYNJ2O15056 1496 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 NME2P1O60361 137 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 CXCL14O95715 111 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 GSTA1P08263 222 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 PGAM2P15259 253 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 FASP25445 335 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 MAT2AP31153 395 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 MAGEA9P43362 315 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 VCPP55072 806 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 LASP1Q14847 261 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 SLC10A1Q14973 349 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 CD226Q15762 336 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 PRR30Q53SZ7 412 aaPredicted RBP3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 SEL1L2Q5TEA6 688 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 CWC27Q6UX04 472 aaKnown RBP3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 PAMR1Q6UXH9 720 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 ADAMTSL5Q6ZMM2 481 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 SLC22A16Q86VW1 577 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 MSANTD4Q8NCY6 345 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 DTD2Q96FN9 168 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 TEX13AQ9BXU3 409 aaPredicted RBP3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 ESM1Q9NQ30 184 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 HPS4Q9NQG7 708 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 PRODH2Q9UF12 536 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 FAM153AQ9UHL3 310 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 ZNF175Q9Y473 711 aa3.37□□□□□ -1.87
SMCHD1-204ENST00000581226 PTPRUQ92729 1446 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 NPIPA5A0A0B4J1W7 369 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 NPIPA5E9PKD4 350 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 ARPC1BO15143 372 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 VEGFDO43915 354 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 RANBP6O60518 1105 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 KERAO60938 352 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 TSC22D2O75157 780 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 PDE5AO76074 875 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 SYNGR4O95473 234 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 IGHV3-9P01782 118 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 PVRP15151 417 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 ATP6V1B1P15313 513 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 COPB2P35606 906 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 NPY2RP49146 381 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 RAG2P55895 527 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 NLRP11P59045 1033 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 GSG1Q2KHT4 349 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 MS4A13Q5J8X5 152 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 CGB2Q6NT52 195 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 DLEU7Q6UYE1 221 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 RAPH1Q70E73 1250 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 PRSS48Q7RTY5 328 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 PEX5LQ8IYB4 626 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 LEMD2Q8NC56 503 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 OR52J3Q8NH60 311 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 TMEM37Q8WXS4 190 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 DEFB118Q96PH6 123 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 SIGLEC12Q96PQ1 595 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 NLNQ9BYT8 704 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 CARD9Q9H257 536 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 PRMT8Q9NR22 394 aaPredicted RBP3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 CENPMQ9NSP4 180 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 CYP39A1Q9NYL5 469 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 Q9UF83 564 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 TRMT6Q9UJA5 497 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 KLHDC2Q9Y2U9 406 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 TEX264Q9Y6I9 313 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 DHX29Q7Z478 1369 aaKnown RBP3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 NPC1L1Q9UHC9 1359 aa3.36□□□□□ -1.87
SMCHD1-204ENST00000581226 A0A0J9YVX5 310 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms