RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GNLYP22749 145 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 GJB2P29033 226 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CETN2P41208 172 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 MAGEA11P43364 429 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 RGS4P49798 205 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 PGGT1BP53609 377 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 GSTO1P78417 241 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CX3CL1P78423 397 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 DGCR2P98153 550 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ZXDBP98169 803 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 DMTNQ08495 405 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 AMZ1Q400G9 498 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 SPDYCQ5MJ68 293 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 LCE3BQ5TA77 95 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 FAM69BQ5VUD6 431 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 TYW3Q6IPR3 259 aaKnown RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 Q6ZSV7 163 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 IL17RELQ6ZVW7 336 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ZDHHC17Q8IUH5 632 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 PHC2Q8IXK0 858 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 SLC39A11Q8N1S5 342 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CPSF7Q8N684 471 aaKnown RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 BBOF1Q8ND07 529 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 TRPV3Q8NET8 790 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 TMEM174Q8WUU8 243 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 PHYHIPQ92561 330 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 GLYATL1Q969I3 302 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 MRPL53Q96EL3 112 aaKnown RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 OXNAD1Q96HP4 312 aaPredicted RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 PIWIL1Q96J94 861 aaKnown RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 CXorf58Q96LI9 332 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 GPR137Q96N19 417 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 RAB40CQ96S21 281 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ALKBH7Q9BT30 221 aaPredicted RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 LRRC2Q9BYS8 371 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ACTL8Q9H568 366 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 RAVER2Q9HCJ3 691 aaKnown RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 FAM114A2Q9NRY5 505 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ACOXLQ9NUZ1 547 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 RAB20Q9NX57 234 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CFAP45Q9UL16 551 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 FOXJ3Q9UPW0 622 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 MRPS33Q9Y291 106 aaKnown RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 HS3ST3A1Q9Y663 406 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 MN1Q10571 1320 aaPredicted RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 ATXN2Q99700 1313 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 MYH1P12882 1939 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 OTOL1A6NHN0 477 aaPredicted RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 L7N2F9 121 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ARPC2O15144 300 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 OGTO15294 1046 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 KIF5CO60282 957 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ECI2O75521 394 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 RFPL2O75678 378 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ZNF286BP0CG31 522 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ANXA8P13928 327 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 CBLP22681 906 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 DUTP33316 252 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 PTGFRP43088 359 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 VAMP7P51809 220 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 PDX1P52945 283 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 GEMP55040 296 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 RPP38P78345 283 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 PDE1BQ01064 536 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 MGAT3Q09327 533 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 PDK3Q15120 406 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 GPAT3Q53EU6 434 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ZNF542PQ5EBM4 170 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ARMCX4Q5H9R4 360 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 PHYHD1Q5SRE7 291 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ANXA8L1Q5VT79 327 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 ASPHD2Q6ICH7 369 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 METAP1DQ6UB28 335 aaPredicted RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 TMEM139Q8IV31 216 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 VRK3Q8IV63 474 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 CRYBG2Q8N1P7 616 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 KLHDC1Q8N7A1 406 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 NOA1Q8NC60 698 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 BHLHE23Q8NDY6 225 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 WFIKKN2Q8TEU8 576 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 CACTINQ8WUQ7 758 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 OSTF1Q92882 214 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 NT5C3BQ969T7 300 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 RBM41Q96IZ5 413 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 SENP8Q96LD8 212 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 PRICKLE1Q96MT3 831 aaPredicted RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 CSF3RQ99062 836 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 TRAF4Q9BUZ4 470 aaPredicted RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 CRNKL1Q9BZJ0 848 aaKnown RBP5.25□□□□□ -1.57
VPS53-219ENST00000576019 NACA2Q9H009 215 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 SLC38A10Q9HBR0 1119 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 PSME2Q9UL46 239 aa5.25□□□□□ -1.57
VPS53-219ENST00000576019 LINC00854A0A1B0GVQ3 168 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 SERTM2A0A1B0GWG4 89 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 ANTXRLA6NF34 631 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 ZNF208O43345 1280 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 BUB1O43683 1085 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 SNNO75324 88 aaPredicted RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 TM7SF2O76062 418 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms