RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZNF793Q6ZN11 406 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 VN1R5Q7Z5H4 357 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.24■□□□□ 0.19
CLK3-227ENST00000570296 PPM1NQ8N819 430 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 ACOT4Q8N9L9 421 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 LRRC57Q8N9N7 239 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 RDH11Q8TC12 318 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 CALML6Q8TD86 181 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 DOK4Q8TEW6 326 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 TANKQ92844 425 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 DTNBP1Q96EV8 351 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 OSBPL11Q9BXB4 747 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 PHACTR1Q9C0D0 580 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 ACTR6Q9GZN1 396 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 FANCFQ9NPI8 374 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 FBXO5Q9UKT4 447 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 PLCE1Q9P212 2302 aa16.24■□□□□ 0.19
CLK3-227ENST00000570296 CLOCKO15516 846 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 ICOSLGO75144 302 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 SCELO95171 688 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 ALDOAP04075 364 aaKnown RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 CD3EP07766 207 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 ABCB1P08183 1280 aaPredicted RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 KRT15P19012 456 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 SRD5A2P31213 254 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 GZMKP49863 264 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 NAP1L1P55209 391 aaKnown RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 IL2P60568 153 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 WDSUB1Q8N9V3 476 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 FIG4Q92562 907 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 RIT1Q92963 219 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 ZNF669Q96BR6 464 aaPredicted RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 VPS39Q96JC1 886 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 F2RL3Q96RI0 385 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 NDNQ99608 321 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 TACO1Q9BSH4 297 aaKnown RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 NTMT1Q9BV86 223 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 C12orf65Q9H3J6 166 aaKnown RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 RPF2Q9H7B2 306 aaKnown RBP16.23■□□□□ 0.19
CLK3-227ENST00000570296 CHODLQ9H9P2 273 aa16.23■□□□□ 0.19
CLK3-227ENST00000570296 SYCE3A1L190 88 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 MIF4GDA9UHW6 222 aaKnown RBP16.22■□□□□ 0.19
CLK3-227ENST00000570296 GOLGA6L19H0YKK7 550 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 CD8AP01732 235 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 NAGAP17050 411 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 ITGA2P17301 1181 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 TPSB2P20231 275 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 DPP4P27487 766 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 ABCD3P28288 659 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 GALNSP34059 522 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 SPA17Q15506 151 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 TPSAB1Q15661 275 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 FAM214BQ7L5A3 538 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 UBE3DQ7Z6J8 389 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 DTX2Q86UW9 622 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 C17orf47Q8NEP4 570 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 C1orf159Q96HA4 380 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 GALNT9Q9HCQ5 603 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 MS4A12Q9NXJ0 267 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 WHRNQ9P202 907 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 MRPS18CQ9Y3D5 142 aaKnown RBP16.22■□□□□ 0.19
CLK3-227ENST00000570296 ZNF175Q9Y473 711 aa16.22■□□□□ 0.19
CLK3-227ENST00000570296 PRKDCP78527 4128 aaKnown RBP16.21■□□□□ 0.19
CLK3-227ENST00000570296 ZCWPW2A0A1B0GU75 182 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 MAGEB16A2A368 324 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 SLC35F4A4IF30 521 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 PPM1BO75688 479 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 PYGBP11216 843 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 HIST1H1TP22492 207 aaPredicted RBP16.21■□□□□ 0.19
CLK3-227ENST00000570296 PTGDSP41222 190 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 COMPP49747 757 aaPredicted RBP16.21■□□□□ 0.19
CLK3-227ENST00000570296 EEFSECP57772 596 aaKnown RBP16.21■□□□□ 0.19
CLK3-227ENST00000570296 CYP1B1Q16678 543 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 NCMAPQ5T1S8 102 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 NUP54Q7Z3B4 507 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 CNGA4Q8IV77 575 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 PRR22Q8IZ63 422 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 C1orf54Q8WWF1 131 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 NEUROG1Q92886 237 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 HGDQ93099 445 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 ADIPOR1Q96A54 375 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 ADAD1Q96M93 576 aaKnown RBP16.21■□□□□ 0.19
CLK3-227ENST00000570296 PLSCR4Q9NRQ2 329 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 KLRF1Q9NZS2 232 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 GPR52Q9Y2T5 361 aa16.21■□□□□ 0.19
CLK3-227ENST00000570296 GRID2IPA4D2P6 1211 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 C2orf72A6NCS6 295 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 TNFRSF21O75509 655 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 PEPDP12955 493 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 CDKN2DP55273 166 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 SNX1Q13596 522 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 PPP1R3AQ16821 1122 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 ADNP2Q6IQ32 1131 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 PEX26Q7Z412 305 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 PLCZ1Q86YW0 608 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 OR6K3Q8NGY3 331 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 ZFAND2BQ8WV99 257 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 PROX1Q92786 737 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 EHD1Q9H4M9 534 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 C20orf96Q9NUD7 363 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms