RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RAD23AP54725 363 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 PCBP3P57721 371 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 MRPS35P82673 323 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 DAB2P98082 770 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 BNC1Q01954 994 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 FOLH1Q04609 750 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 MAP4K2Q12851 820 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 IL11RAQ14626 422 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 TTC23Q5W5X9 447 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CDC73Q6P1J9 531 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 RNF111Q6ZNA4 994 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ZNF761Q86XN6 746 aaPredicted RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 ZDHHC21Q8IVQ6 265 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 APLFQ8IW19 511 aaPredicted RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 LILRA2Q8N149 483 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ARHGEF39Q8N4T4 335 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 AMER3Q8N944 861 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 OR7G1Q8NGA0 311 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 OR5K1Q8NHB7 308 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 PNPT1Q8TCS8 783 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 PROX1Q92786 737 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CCDC74AQ96AQ1 378 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ART5Q96L15 291 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 TRNT1Q96Q11 434 aaKnown RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 MACROD1Q9BQ69 325 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 TRIM8Q9BZR9 551 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 SLC7A5P2Q9GIP4 190 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 KLHL25Q9H0H3 589 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 IRF2BPLQ9H1B7 796 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 LRRN3Q9H3W5 708 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 RUBCNLQ9H714 662 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 REEP1Q9H902 201 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 MTHFD2LQ9H903 347 aaPredicted RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 SLAMF7Q9NQ25 335 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 DUSP22Q9NRW4 184 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 THSD1Q9NS62 852 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 CUTCQ9NTM9 273 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 GPATCH2Q9NW75 528 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 KLHL28Q9NXS3 571 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 TRPC4Q9UBN4 977 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ZNF639Q9UID6 485 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 C3orf18Q9UK00 162 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 SLC13A4Q9UKG4 626 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 C19orf53Q9UNZ5 99 aaPredicted RBP7.48□□□□□ -1.21
VPS39-213ENST00000570062 SATB2Q9UPW6 733 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 IFT52Q9Y366 437 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 ATG2BQ96BY7 2078 aa7.48□□□□□ -1.21
VPS39-213ENST00000570062 DCHS1Q96JQ0 3298 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CPED1A4D0V7 1026 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 MAGEA13PA6NCF6 341 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 GLOD5A6NK44 160 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 TMEM150CB9EJG8 249 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 C4orf51C9J302 202 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SGK494L7N484 410 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 PCDH17O14917 1159 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 DSCR3O14972 297 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 FLRT2O43155 660 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SIGLEC6O43699 453 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SLC28A2O43868 658 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 TPST1O60507 370 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 IFNW1P05000 195 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 HMGN2P05204 90 aaKnown RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 ALOX5P09917 674 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CDK4P11802 303 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CKMT2P17540 419 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 RHCEP18577 417 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 NT5EP21589 574 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ALDH3A2P51648 485 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 PRKAG1P54619 331 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 IGLV3-21P80748 117 aaPredicted RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 SIM1P81133 766 aaPredicted RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 SLC13A2Q13183 592 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ILKQ13418 452 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 DAG1Q14118 895 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ANGPT1Q15389 498 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 LRRC36Q1X8D7 754 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 AMZ1Q400G9 498 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ZNF628Q5EBL2 1059 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 AP1ARQ63HQ0 302 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 OR2T5Q6IEZ7 315 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SHQ1Q6PI26 577 aaKnown RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 TMEM107Q6UX40 140 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 DBX2Q6ZNG2 339 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 C16orf62Q7Z3J2 963 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SZRD1Q7Z422 152 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 AMIGO2Q86SJ2 522 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SFTPA2Q8IWL1 248 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CLEC4FQ8N1N0 589 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 MARVELD2Q8N4S9 558 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 HORMAD2Q8N7B1 307 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 Q8N9G6 341 aaPredicted RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 PIK3C3Q8NEB9 887 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 TOR1AIP2Q8NFQ8 470 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 OR9A4Q8NGU2 314 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 OR2T29Q8NH02 315 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 OR5AK3PQ8NH89 298 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 NFKBIDQ8NI38 313 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SPPL2AQ8TCT8 520 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SLC38A5Q8WUX1 472 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 XAGE5Q8WWM1 108 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms