RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 VMACQ2NL98 169 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 ZNF559Q9BR84 538 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 ERVK-18Q9QC07 812 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 ZNF43P17038 809 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 AK4P27144 223 aaPredicted RBP12.82□□□□□ -0.36
TRAF3-208ENST00000560371 NOVP48745 357 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 TUBA3CQ13748 450 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 MFSD6LQ8IWD5 586 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 FUBP1Q96AE4 644 aaKnown RBP12.82□□□□□ -0.36
TRAF3-208ENST00000560371 DDIT4LQ96D03 193 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 HHIPL1Q96JK4 782 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 TUBA8Q9NY65 449 aaPredicted RBP12.82□□□□□ -0.36
TRAF3-208ENST00000560371 ETFAP13804 333 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 RAB6CQ53S08 254 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 UBE2Q1Q7Z7E8 422 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 ACTRT3Q9BYD9 372 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 RAB6CQ9H0N0 254 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 MKLN1Q9UL63 735 aa12.82□□□□□ -0.36
TRAF3-208ENST00000560371 SPTBP11277 2137 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 CEP250Q9BV73 2442 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SCAMP2O15127 329 aaKnown RBP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 FLRT2O43155 660 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 FCER2P06734 321 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 PEPDP12955 493 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 OR6C4Q8NGE1 309 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 C16orf78Q8WTQ4 265 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ZBED3Q96IU2 234 aaPredicted RBP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SERINC2Q96SA4 455 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 MCOLN1Q9GZU1 580 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 EXOSC1Q9Y3B2 195 aaKnown RBP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 PCDHGA6Q9Y5G7 932 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ANHXE9PGG2 379 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ATE1O95260 518 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 TEX26Q8N6G2 289 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 PSD4Q8NDX1 1056 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 OR7G3Q8NG95 312 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SLC5A7Q9GZV3 580 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SLC22A4Q9H015 551 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 MTHFD2LQ9H903 347 aaPredicted RBP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 CCDC163A0A0D9SF12 145 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 UNC119BA6NIH7 251 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SDHDO14521 159 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 RAD51DO75771 328 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 PRSS56P0CW18 603 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ACTC1P68032 377 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ACTA1P68133 377 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 GAS6Q14393 721 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 IER5LQ5T953 404 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 GLT8D1Q68CQ7 371 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SHISA6Q6ZSJ9 500 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ECHDC3Q96DC8 303 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 TMEM68Q96MH6 324 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 RNF38Q9H0F5 515 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ATXN7L1Q9ULK2 861 aaPredicted RBP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SRPK3Q9UPE1 567 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 XPNPEP2O43895 674 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SFTPDP35247 375 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 TUBB3Q13509 450 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SLC5A8Q8N695 610 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 MOCOSQ96EN8 888 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 CPNE7Q9UBL6 633 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ACSL6Q9UKU0 697 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SPO11Q9Y5K1 396 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SLC35F4A4IF30 521 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 OR2AT4A6NND4 320 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SF3B4Q15427 424 aaKnown RBP eCLIP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ALOXE3Q9BYJ1 711 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 NAA10P41227 235 aaPredicted RBP12.81□□□□□ -0.36
TRAF3-208ENST00000560371 CYS1Q717R9 158 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ISCA2Q86U28 154 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ELP5Q8TE02 316 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 SCP2D1Q9UJQ7 156 aa12.81□□□□□ -0.36
TRAF3-208ENST00000560371 ABCB7O75027 752 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 RIDAP52758 137 aaKnown RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 CDH15P55291 814 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 FAM78AQ5JUQ0 283 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 STEAP4Q687X5 459 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 FAM180BQ6P0A1 224 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 LIPIQ6XZB0 460 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 CBARPQ8N350 705 aaPredicted RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 SPRYD4Q8WW59 207 aaPredicted RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 CITED4Q96RK1 184 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 RXFP3Q9NSD7 469 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 LRIT1Q9P2V4 623 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 NOP16Q9Y3C1 178 aaKnown RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 AP1M2Q9Y6Q5 423 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 MAMDC2Q7Z304 686 aaPredicted RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 RBM12BQ8IXT5 1001 aaKnown RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 IL17CQ9P0M4 197 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 DHDHQ9UQ10 334 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 E2F3O00716 465 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 SOX9P48436 509 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 AFF1P51825 1210 aaKnown RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 ERVFC1P60507 584 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 E2F1Q01094 437 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 GRIK2Q13002 908 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 MEP1AQ16819 746 aa12.8□□□□□ -0.36
TRAF3-208ENST00000560371 EIF5AL1Q6IS14 154 aaKnown RBP12.8□□□□□ -0.36
TRAF3-208ENST00000560371 NFS1Q9Y697 457 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 130.3 ms