RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 KCTD11Q693B1 232 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 SPINK14Q6IE38 97 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 SLC25A25Q6KCM7 469 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 CNSTQ6PJW8 725 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 C3P1Q6ZMU1 363 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 NEK10Q6ZWH5 1172 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 TAS2R42Q7RTR8 314 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 GALNTL5Q7Z4T8 443 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 CPEB2Q7Z5Q1 589 aaKnown RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 KCTD20Q7Z5Y7 419 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 PCGF5Q86SE9 256 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 CRLF3Q8IUI8 442 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 TMTC1Q8IUR5 882 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 SLC22A15Q8IZD6 547 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 BEST3Q8N1M1 668 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 GHDCQ8N2G8 530 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 FAM109AQ8N4B1 249 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 C2orf73Q8N5S3 287 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 MYRIPQ8NFW9 859 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 OR2L3Q8NG85 312 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 OR2A1Q8NGT9 310 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 FAM57AQ8TBR7 257 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 M1APQ8TC57 530 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 STYXQ8WUJ0 223 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 ASB5Q8WWX0 329 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 TMEM158Q8WZ71 300 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 ELMO1Q92556 727 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 DNAJC1Q96KC8 554 aaKnown RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 IL17FQ96PD4 163 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 QKIQ96PU8 341 aaKnown RBP eCLIP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 OR2A5Q96R48 311 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 FAM118BQ9BPY3 351 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 APOL2Q9BQE5 337 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 BPIFA3Q9BQP9 254 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 ZNF559Q9BR84 538 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 GBA3Q9H227 469 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 C10orf88Q9H8K7 445 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 MKKSQ9NPJ1 570 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 C14orf105Q9NVL8 296 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 SMARCAL1Q9NZC9 954 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 COQ3Q9NZJ6 369 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 KLHL8Q9P2G9 620 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 TRPC4Q9UBN4 977 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 RSPH14Q9UHP6 348 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 CAPN11Q9UMQ6 739 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 CDC14AQ9UNH5 594 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 RNF6Q9Y252 685 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 AAR2Q9Y312 384 aaKnown RBP3.3□□□□□ -1.88
LIMA1-206ENST00000550611 PCM1Q15154 2024 aa3.3□□□□□ -1.88
LIMA1-206ENST00000550611 TENM1Q9UKZ4 2725 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ANKRD12Q6UB98 2062 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 hCG_1818297A0A087WSY0 165 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 IGHV3-20A0A0C4DH32 117 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 A0A0J9YVX5 310 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 A0A0U1RQJ8 604 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 A0A1B0GTH9 108 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FEZF1A0PJY2 475 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CCDC189A1A4V9 331 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 NKX2-6A6NCS4 301 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 AQP12BA6NM10 295 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 A8MUI8 341 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 H7C1Q1 480 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FCHO1O14526 889 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PIP5K1BO14986 540 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PHF1O43189 567 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PIP5K1CO60331 668 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 NME2P1O60361 137 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 OR1I1O60431 355 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CRLF1O75462 422 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 INMTO95050 263 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 C1orf105O95561 183 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TPOP07202 933 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 OR56A5P0C7T3 313 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 C8orf89P0DMQ9 161 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ERGP11308 486 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ABOP16442 354 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 DNASE1P24855 282 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PSMB4P28070 264 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PSMB5P28074 263 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 EEF1DP29692 281 aaKnown RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FOXN2P32314 431 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SLC1A1P43005 524 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TNNT3P45378 269 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 NR0B1P51843 470 aaKnown RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 WNT3P56703 355 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 MAT1AQ00266 395 aaKnown RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ACVR1Q04771 509 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ZNF33BQ06732 778 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FAM53BQ14153 422 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FASTKQ14296 549 aaKnown RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SPARCL1Q14515 664 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 KRT72Q14CN4 511 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SLC18A3Q16572 532 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 STX1AQ16623 288 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 MEP1AQ16819 746 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SYT16Q17RD7 645 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 HKDC1Q2TB90 917 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ZIK1Q3SY52 487 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms