RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TRIM64A6NGJ6 449 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 TRIM64BA6NI03 449 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 A8MXE2 369 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 DEFB108AA8MXU0 73 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 INAFM1C9JVW0 142 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 CES2O00748 559 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 PGRMC2O15173 223 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 SEC31AO94979 1220 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 FAM58BPP0C7Q3 252 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 GPX3P22352 226 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 NRG3P56975 720 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 SETDB1Q15047 1291 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 TMEM81Q6P7N7 255 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 PRSS57Q6UWY2 283 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 ISCA2Q86U28 154 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 GALNT12Q8IXK2 581 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 C17orf47Q8NEP4 570 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 SPATA3Q8NHX4 192 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 WNT2BQ93097 391 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 HGDQ93099 445 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 PIGTQ969N2 578 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 CTHRC1Q96CG8 243 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 NODALQ96S42 347 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 ATOH8Q96SQ7 321 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 RBBP8Q99708 897 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 NXF5Q9H1B4 397 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 GALNT9Q9HCQ5 603 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 NUDT4Q9NZJ9 180 aa16.19■□□□□ 0.18
CLSTN3-214ENST00000542663 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 C2orf72A6NCS6 295 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 H0Y3Z8 333 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 UBXN8O00124 270 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 CASKO14936 926 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 SNPHO15079 494 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 CTIFO43310 598 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 TNFSF13O75888 250 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 S1PR1P21453 382 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 RPP38P78345 283 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 SRYQ05066 204 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 ILF2Q12905 390 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 CBLBQ13191 982 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 CYP20A1Q6UW02 462 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 YTHDF3Q7Z739 585 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 ZBED8Q8IZ13 594 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 LRRN4CLQ8ND94 238 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 PPP1R14CQ8TAE6 165 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 WFIKKN1Q96NZ8 548 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 CENPKQ9BS16 269 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 BDH2Q9BUT1 245 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 OR2B2Q9GZK3 357 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 PIGMQ9H3S5 423 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 METTL7AQ9H8H3 244 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 SERHLQ9NQF3 203 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 NDRG3Q9UGV2 375 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 PACSIN3Q9UKS6 424 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 MAPRE3Q9UPY8 281 aa16.18■□□□□ 0.18
CLSTN3-214ENST00000542663 SUPT3HB4E1H0 165 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 ICOSLGO75144 302 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 SUPT3HO75486 399 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 PPM1BO75688 479 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 GBAP04062 536 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 EPB42P16452 691 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 PTX3P26022 381 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 PIK3R1P27986 724 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 SSTR1P30872 391 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 CPOXP36551 454 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 GFRA1P56159 465 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 RAB10P61026 200 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 FAM27E3Q08E93 113 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 NNATQ16517 81 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 OR52E8Q6IFG1 317 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 SLC30A6Q6NXT4 461 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 TRIM42Q8IWZ5 723 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 KLHL7Q8IXQ5 586 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 WDSUB1Q8N9V3 476 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 STAG3L4Q8TBR4 150 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 PERPQ96FX8 193 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 REPIN1Q9BWE0 567 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 OSBPL11Q9BXB4 747 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 WDR41Q9HAD4 459 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 PCDHGA11Q9Y5H2 935 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 WIF1Q9Y5W5 379 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 CR1P17927 2039 aa16.17■□□□□ 0.18
CLSTN3-214ENST00000542663 H0YIV9 168 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 KERAO60938 352 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 CDH16O75309 829 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 RHOXF2BP0C7M4 288 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 MTHFD2P13995 350 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 MC3RP41968 323 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 STARP49675 285 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 LHX2P50458 406 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 DR1Q01658 176 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 CUL3Q13618 768 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 ACKR1Q16570 336 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 LIPJQ5W064 366 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 ENPP6Q6UWR7 440 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 NUDT13Q86X67 352 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 MYLK4Q86YV6 388 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 TEX9Q8N6V9 391 aa16.16■□□□□ 0.18
CLSTN3-214ENST00000542663 OR14L1PQ8NHC6 308 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms