RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 UCN2Q96RP3 112 aa12.38□□□□□ -0.43
SS18-204ENST00000539244 NEUROD4Q9HD90 331 aa12.38□□□□□ -0.43
SS18-204ENST00000539244 BEX4Q9NWD9 120 aaPredicted RBP12.38□□□□□ -0.43
SS18-204ENST00000539244 GRHL1Q9NZI5 618 aa12.38□□□□□ -0.43
SS18-204ENST00000539244 ACOT9Q9Y305 439 aa12.38□□□□□ -0.43
SS18-204ENST00000539244 ANGPTL3Q9Y5C1 460 aa12.38□□□□□ -0.43
SS18-204ENST00000539244 DNHD1Q96M86 4753 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 NSD1Q96L73 2696 aaPredicted RBP12.37□□□□□ -0.43
SS18-204ENST00000539244 MED12LQ86YW9 2145 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 FAM187AA6NFU0 413 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SNPHO15079 494 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 PPM1BO75688 479 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 ABCB1P08183 1280 aaPredicted RBP12.37□□□□□ -0.43
SS18-204ENST00000539244 RHOXF2BP0C7M4 288 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 TMIGD3P0DMS9 266 aaPredicted RBP12.37□□□□□ -0.43
SS18-204ENST00000539244 GPX3P22352 226 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SOX18P35713 384 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 PTGDSP41222 190 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SLCO1A2P46721 670 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 AGFG1P52594 562 aaKnown RBP12.37□□□□□ -0.43
SS18-204ENST00000539244 LTBQ06643 244 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SNTA1Q13424 505 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 NAB1Q13506 487 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 GTF2H2Q13888 395 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 ACAP2Q15057 778 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 PFKFB4Q16877 469 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SLC30A6Q6NXT4 461 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 GTF2H2CQ6P1K8 395 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 GOLGA7Q7Z5G4 137 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 PPM1NQ8N819 430 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 OR4K14Q8NGD5 310 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 OR1J4Q8NGS1 313 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 KCTD4Q8WVF5 259 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SMPDL3BQ92485 455 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 HGDQ93099 445 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 ISL2Q96A47 359 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 SERPINI1Q99574 410 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 NAPGQ99747 312 aaPredicted RBP12.37□□□□□ -0.43
SS18-204ENST00000539244 SFXN3Q9BWM7 321 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 NXF5Q9H1B4 397 aaKnown RBP12.37□□□□□ -0.43
SS18-204ENST00000539244 DPH5Q9H2P9 285 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 KCNF1Q9H3M0 494 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 IPPKQ9H8X2 491 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 ADAM29Q9UKF5 820 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 DTX4Q9Y2E6 619 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 RNF11Q9Y3C5 154 aa12.37□□□□□ -0.43
SS18-204ENST00000539244 A0A087X1B8 175 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 A0A1W2PPR1 153 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 LRRC14BA6NHZ5 514 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 GNB5O14775 395 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 ERN1O75460 977 aaKnown RBP12.36□□□□□ -0.43
SS18-204ENST00000539244 RCBTB2O95199 551 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 GBAP04062 536 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 INHBBP09529 407 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 CYP4B1P13584 511 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 GFAPP14136 432 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 CPMP14384 443 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 STX2P32856 288 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 PIK3CGP48736 1102 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 XKP51811 444 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 NEK2P51955 445 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 MRPS25P82663 173 aaKnown RBP12.36□□□□□ -0.43
SS18-204ENST00000539244 FAM83EQ2M2I3 478 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 C10orf62Q5T681 223 aaPredicted RBP12.36□□□□□ -0.43
SS18-204ENST00000539244 SHEQ5VZ18 495 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 ANGPTL8Q6UXH0 198 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 NUP54Q7Z3B4 507 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 YRDCQ86U90 279 aaKnown RBP12.36□□□□□ -0.43
SS18-204ENST00000539244 PRR22Q8IZ63 422 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 TM9SF2Q99805 663 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 TUBA1CQ9BQE3 449 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 YIPF4Q9BSR8 244 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 RBM24Q9BX46 236 aaKnown RBP12.36□□□□□ -0.43
SS18-204ENST00000539244 GALNT8Q9NY28 637 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 ZNF639Q9UID6 485 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 CFL2Q9Y281 166 aa12.36□□□□□ -0.43
SS18-204ENST00000539244 TNPO3Q9Y5L0 923 aaKnown RBP12.36□□□□□ -0.43
SS18-204ENST00000539244 FN1P02751 2386 aaKnown RBP12.35□□□□□ -0.43
SS18-204ENST00000539244 ACOX3O15254 700 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 ICOSLGO75144 302 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 CLDN9O95484 217 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 ATP1B1P05026 303 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 C2P06681 752 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 PORP16435 677 aaPredicted RBP12.35□□□□□ -0.43
SS18-204ENST00000539244 KRT15P19012 456 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 GCKP35557 465 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 PCYT1AP49585 367 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 GNG11P61952 73 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 EEF1A1P68104 462 aaKnown RBP12.35□□□□□ -0.43
SS18-204ENST00000539244 IRF9Q00978 393 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 MGAT2Q10469 447 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 MAP4K2Q12851 820 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 FOXF2Q12947 444 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 TOMM20Q15388 145 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 PRICKLE4Q2TBC4 344 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 C6orf163Q5TEZ5 329 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 EEF1A1P5Q5VTE0 462 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 SCIMPQ6UWF3 145 aa12.35□□□□□ -0.43
SS18-204ENST00000539244 CXorf67Q86X51 503 aaPredicted RBP12.35□□□□□ -0.43
SS18-204ENST00000539244 VWA5B2Q8N398 1253 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms