RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 A0A1W2PPK0 400 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 DUX1O43812 170 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 CIDEAO60543 219 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 MAGEC1O60732 1142 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 LRCH4O75427 683 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 IGLV1-44P01699 117 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 IGHV4-34P06331 123 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 LIPFP07098 398 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 H1F0P07305 194 aaKnown RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 PLA2G4BP0C869 781 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 GIMD1P0DJR0 217 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ERVK-10P10266 1014 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ATF6P18850 670 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 CBLP22681 906 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ACAT1P24752 427 aaKnown RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 TUFMP49411 452 aaKnown RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 PRKCEQ02156 737 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 PPP2R5CQ13362 524 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 CUL3Q13618 768 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 KIR2DS5Q14953 304 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 UGCGQ16739 394 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ANKRD20A4Q4UJ75 823 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 CEP55Q53EZ4 464 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 SYT14P1Q58G82 188 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ANKRD20A8PQ5CZ79 823 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TECRLQ5HYJ1 363 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 MDH1BQ5I0G3 518 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TCTE1Q5JU00 501 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ANKRD20A2Q5SQ80 823 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 NDUFAF5Q5TEU4 345 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ANKRD20A1Q5TYW2 823 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ANKRD20A3Q5VUR7 823 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TXNRD3NBQ6F5E7 133 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 IYDQ6PHW0 289 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 EFL1Q7Z2Z2 1120 aaKnown RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 NUP54Q7Z3B4 507 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TRPT1Q86TN4 253 aaKnown RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 ERC1Q8IUD2 1116 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 SYCP3Q8IZU3 236 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 CRYBG2Q8N1P7 616 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ARHGAP24Q8N264 748 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TMCO5AQ8N6Q1 288 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ZNF611Q8N823 705 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 MSANTD4Q8NCY6 345 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TRIM58Q8NG06 486 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 FGFBP3Q8TAT2 258 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 RNF128Q8TEB7 428 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 HEXDCQ8WVB3 486 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 SSMEM1Q8WWF3 244 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 ITLN2Q8WWU7 325 aaPredicted RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 NSMAFQ92636 917 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 RAD54LQ92698 747 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 DHX58Q96C10 678 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 SNRNP40Q96DI7 357 aaKnown RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 C19orf60Q96EN9 201 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 CPB2Q96IY4 423 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 JPH2Q9BR39 696 aaPredicted RBP3.4□□□□□ -1.87
CD44-235ENST00000532339 VN1R1Q9GZP7 353 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 FN3KQ9H479 309 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 SGK2Q9HBY8 427 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 DNAJC4Q9NNZ3 241 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 SPHK2Q9NRA0 654 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 NLGN3Q9NZ94 848 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 TBC1D7Q9P0N9 293 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 B3GAT1Q9P2W7 334 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 C2CD2Q9Y426 696 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 STK36Q9NRP7 1315 aa3.4□□□□□ -1.87
CD44-235ENST00000532339 A0A1B0GUA9 196 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 A0A1B0GVY2 172 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 A0A1W2PPI3 338 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 TRIM64A6NGJ6 449 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 OOEPA6NGQ2 149 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 TRIM64BA6NI03 449 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 WASH3PC4AMC7 463 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 NR5A2O00482 541 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 ST8SIA3O43173 380 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 CRLF1O75462 422 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 TFAP2AP05549 437 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 VIMP08670 466 aaKnown RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 OR4Q2P0C623 313 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 SAGP10523 405 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 HAPLN1P10915 354 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 HMGA1P17096 107 aaKnown RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 ARF4P18085 180 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 ITIH1P19827 911 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 WNT5AP41221 380 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 RABIFP47224 123 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 NR2C2P49116 596 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 THOP1P52888 689 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 CLDN15P56746 228 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 DLK1P80370 383 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 OVGP1Q12889 678 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 MFAP5Q13361 173 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 KIR2DS3Q14952 304 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 SLC1A5Q15758 541 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 CDKN3Q16667 212 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 CDO1Q16878 200 aa3.39□□□□□ -1.87
CD44-235ENST00000532339 ZC2HC1CQ53FD0 456 aaPredicted RBP3.39□□□□□ -1.87
CD44-235ENST00000532339 GLRA4Q5JXX5 417 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms