RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 EHD1Q9H4M9 534 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 PRDM13Q9H4Q3 707 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 ZNF385DQ9H6B1 395 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 XKR8Q9H6D3 395 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 ACTR8Q9H981 624 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 ACTR5Q9H9F9 607 aaPredicted RBP3.96□□□□□ -1.78
CD44-226ENST00000527889 FSCN3Q9NQT6 498 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 PLSCR4Q9NRQ2 329 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 IMP3Q9NV31 184 aaKnown RBP3.96□□□□□ -1.78
CD44-226ENST00000527889 MALT1Q9UDY8 824 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 ACSL5Q9ULC5 683 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 STK38LQ9Y2H1 464 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.96□□□□□ -1.78
CD44-226ENST00000527889 POLR3HQ9Y535 204 aaPredicted RBP3.96□□□□□ -1.78
CD44-226ENST00000527889 HS3ST3A1Q9Y663 406 aa3.96□□□□□ -1.78
CD44-226ENST00000527889 COPG1Q9Y678 874 aaKnown RBP3.96□□□□□ -1.78
CD44-226ENST00000527889 DNAJC13O75165 2243 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 MED12Q93074 2177 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 LOC100653049A0A140TA62 436 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 A0A1W2PPV9 198 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 A8MUI8 341 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 E7ENX8 843 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 PSMD12O00232 456 aaPredicted RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 NR5A2O00482 541 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 AP3D1O14617 1153 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 HOXA3O43365 443 aaPredicted RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 DOK2O60496 412 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 VPS4BO75351 444 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 ZNF217O75362 1048 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 ATP5HO75947 161 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KRT34O76011 436 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 TNFP01375 233 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 WNT1P04628 370 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 RPN2P04844 631 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KRT16P08779 473 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CSF1P09603 554 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 EBLN1P0CF75 366 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 PRR35P0CG20 571 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 PCNAP12004 261 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CDH1P12830 882 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 SLC2A4P14672 509 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 EZRP15311 586 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 NQO1P15559 274 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 LBPP18428 481 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 AOC1P19801 751 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 IDSP22304 550 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CALB2P22676 271 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KELP23276 732 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 PTPN4P29074 926 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 RPS9P46781 194 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 CXCL12P48061 93 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CCT8P50990 548 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 DIO3P55073 304 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 YPEL5P62699 121 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 RPL38P63173 70 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 SLC25A3Q00325 362 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 TAP2Q03519 686 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 SRSF1Q07955 248 aaKnown RBP eCLIP3.95□□□□□ -1.78
CD44-226ENST00000527889 SRSF5Q13243 272 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 C1orf61Q13536 156 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CUL3Q13618 768 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 NFYCQ13952 458 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 DOC2AQ14183 400 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 ERV3-1Q14264 604 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 FZD2Q14332 565 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KRT33BQ14525 404 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 TBCCQ15814 346 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CSRP2Q16527 193 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 IMPG1Q17R60 797 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KIF19Q2TAC6 998 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 FAM214AQ32MH5 1076 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 ATP6AP1LQ52LC2 224 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 ZMAT1Q5H9K5 638 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 C6orf136Q5SQH8 315 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CACHD1Q5VU97 1274 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 FRG2Q64ET8 278 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 GRHL2Q6ISB3 625 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 METTL2BQ6P1Q9 378 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 WDR73Q6P4I2 378 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 TMEM154Q6P9G4 183 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 TTC23LQ6PF05 361 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 B3GNT6Q6ZMB0 384 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 Q6ZSR9 355 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 ASRGL1Q7L266 308 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 EFL1Q7Z2Z2 1120 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 LONP2Q86WA8 852 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 NRROSQ86YC3 692 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 SFTPA2Q8IWL1 248 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KLHDC8AQ8IYD2 350 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 KIRREL3Q8IZU9 778 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 CPSF7Q8N684 471 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 L3MBTL4Q8NA19 623 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 LINC01555Q8NAE3 123 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 FNDC5Q8NAU1 212 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 FBXO15Q8NCQ5 510 aaPredicted RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 RBM15BQ8NDT2 890 aaKnown RBP3.95□□□□□ -1.78
CD44-226ENST00000527889 ZNF740Q8NDX6 193 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 OR52E1Q8NGJ3 308 aa3.95□□□□□ -1.78
CD44-226ENST00000527889 SLC5A11Q8WWX8 675 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms