RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	IL23R	Q5VWK5	629 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	EMB	Q6PCB8	327 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	ZCCHC12	Q6PEW1	402 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	AFTPH	Q6ULP2	937 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	FAM159A	Q6UWV7	190 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	TMEM64	Q6YI46	380 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	BANP	Q8N9N5	519 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	OR4Q3	Q8NH05	313 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	RAB39B	Q96DA2	213 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	TMEM231	Q9H6L2	316 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	ZNF665	Q9H7R5	613 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	SP140L	Q9H930	580 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	PLEKHA3	Q9HB20	300 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	S100A14	Q9HCY8	104 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	CNOT2	Q9NZN8	540 aa	Known RBP	3.59	□□□□□ -1.83
CD44-223	ENST00000526553	COPS7A	Q9UBW8	275 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	NUDC	Q9Y266	331 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	CROCC	Q5TZA2	2017 aa		3.59	□□□□□ -1.83
CD44-223	ENST00000526553	NCAPD2	Q15021	1401 aa		3.59	□□□□□ -1.84
CD44-223	ENST00000526553	PRDM2	Q13029	1718 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	IGLON5	A6NGN9	336 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553		F8WDY8	70 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	LRP3	O75074	770 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	PEX11A	O75192	247 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	AKR7A3	O95154	331 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	TXNDC12	O95881	172 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	B4GALT1	P15291	398 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	GJB2	P29033	226 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	SLC26A5	P58743	744 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	HERV-K104	P63124	156 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	KLHL30	Q0D2K2	578 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	SPP2	Q13103	211 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	PDIA5	Q14554	519 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	OR1C1	Q15619	314 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF506	Q5JVG8	444 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	LEMD1	Q68G75	181 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	ARSK	Q6UWY0	536 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	LRRC49	Q8IUZ0	686 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	TBC1D10C	Q8IV04	446 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF584	Q8IVC4	421 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	GPD1L	Q8N335	351 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF274	Q96GC6	653 aa	Predicted RBP	3.58	□□□□□ -1.84
CD44-223	ENST00000526553	RCHY1	Q96PM5	261 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	AGPAT1	Q99943	283 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	CBWD1	Q9BRT8	395 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	SIRPD	Q9H106	197 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	SLC26A1	Q9H2B4	701 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	UBE2T	Q9NPD8	197 aa	Predicted RBP	3.58	□□□□□ -1.84
CD44-223	ENST00000526553	HPS4	Q9NQG7	708 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	SLC35D1	Q9NTN3	355 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	CLEC5A	Q9NY25	188 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	NDUFA13	Q9P0J0	144 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	ERVK-18	Q9QC07	812 aa		3.58	□□□□□ -1.84
CD44-223	ENST00000526553	MRTO4	Q9UKD2	239 aa	Known RBP	3.58	□□□□□ -1.84
CD44-223	ENST00000526553	URB2	Q14146	1524 aa	Known RBP	3.58	□□□□□ -1.84
CD44-223	ENST00000526553	ANGPT2	O15123	496 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	SYNGR4	O95473	234 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	SEMA4F	O95754	770 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	PTBP3	O95758	552 aa	Known RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	KRT6B	P04259	564 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	HCK	P08631	526 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	DNAH10OS	P0CZ25	163 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	TPBGL	P0DKB5	382 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	ADSS	P30520	456 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	AKT2	P31751	481 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	MDH1	P40925	334 aa	Known RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	SLC6A8	P48029	635 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	SLC1A6	P48664	564 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	KRT6C	P48668	564 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	CCL11	P51671	97 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	HSD17B7	P56937	341 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	MYBPC1	Q00872	1141 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	GABPB1	Q06547	395 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	NME3	Q13232	169 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	CEBPE	Q15744	281 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	GPAT3	Q53EU6	434 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	RIPPLY2	Q5TAB7	128 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	RALGAPA1	Q6GYQ0	2036 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	GALNT17	Q6IS24	598 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	CAPN13	Q6MZZ7	669 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	NEPRO	Q6NW34	567 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	VIT	Q6UXI7	678 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	ISLR2	Q6UXK2	745 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	VPS36	Q86VN1	386 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	LRRC17	Q8N6Y2	441 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	CCDC197	Q8NCU1	140 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	OR4L1	Q8NH43	312 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	AGAP11	Q8TF27	550 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	ANKRD27	Q96NW4	1050 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	GPA33	Q99795	319 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	FICD	Q9BVA6	458 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	FUNDC2	Q9BWH2	189 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	SALL1	Q9NSC2	1324 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	FAM212B	Q9NTI7	297 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	MED17	Q9NVC6	651 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	CLIP2	Q9UDT6	1046 aa		3.57	□□□□□ -1.84
CD44-223	ENST00000526553	ZNF608	Q9ULD9	1512 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	NIP7	Q9Y221	180 aa	Known RBP eCLIP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	MRPL11	Q9Y3B7	192 aa	Known RBP	3.57	□□□□□ -1.84
CD44-223	ENST00000526553	FGD5	Q6ZNL6	1462 aa		3.56	□□□□□ -1.84

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