RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 RBBP8Q99708 897 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 PIP5K1AQ99755 562 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 TM9SF2Q99805 663 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 TRIM31Q9BZY9 425 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 NXF5Q9H1B4 397 aaKnown RBP13.37□□□□□ -0.27
TRAF4-212ENST00000498540 OR10A5Q9H207 317 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 DDX31Q9H8H2 851 aaKnown RBP13.37□□□□□ -0.27
TRAF4-212ENST00000498540 METTL7AQ9H8H3 244 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 GALNT9Q9HCQ5 603 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 CLCF1Q9UBD9 225 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 FBN1P35555 2871 aaKnown RBP13.37□□□□□ -0.27
TRAF4-212ENST00000498540 RAI1Q7Z5J4 1906 aaPredicted RBP13.37□□□□□ -0.27
TRAF4-212ENST00000498540 COL6A5A8TX70 2615 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 TRIM64A6NGJ6 449 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 TRIM64BA6NI03 449 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 DEFB108AA8MXU0 73 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 INAFM1C9JVW0 142 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 CASKO14936 926 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 SNPHO15079 494 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 GBAP04062 536 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 EPB42P16452 691 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 GPX3P22352 226 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 PTGDSP41222 190 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 ARFIP1P53367 373 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 RAB10P61026 200 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 RPP38P78345 283 aaKnown RBP13.36□□□□□ -0.27
TRAF4-212ENST00000498540 DR1Q01658 176 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 OR52E8Q6IFG1 317 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 CYP20A1Q6UW02 462 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 YTHDF3Q7Z739 585 aaKnown RBP13.36□□□□□ -0.27
TRAF4-212ENST00000498540 ISCA2Q86U28 154 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 TEX9Q8N6V9 391 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 LRRN4CLQ8ND94 238 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 SIMC1Q8NDZ2 872 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 WNT2BQ93097 391 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 PIGTQ969N2 578 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 NODALQ96S42 347 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 ATOH8Q96SQ7 321 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 REPIN1Q9BWE0 567 aaKnown RBP13.36□□□□□ -0.27
TRAF4-212ENST00000498540 WDR41Q9HAD4 459 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 SERHLQ9NQF3 203 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 MAPRE3Q9UPY8 281 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 TSC22D4Q9Y3Q8 395 aa13.36□□□□□ -0.27
TRAF4-212ENST00000498540 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 A8MXE2 369 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 KERAO60938 352 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PPM1BO75688 479 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 TNFSF13O75888 250 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 KRT15P19012 456 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PTX3P26022 381 aaPredicted RBP13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PIK3R1P27986 724 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 SSTR1P30872 391 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 ILF2Q12905 390 aaKnown RBP13.35□□□□□ -0.27
TRAF4-212ENST00000498540 CXXC5Q7LFL8 322 aaKnown RBP13.35□□□□□ -0.27
TRAF4-212ENST00000498540 CMC1Q7Z7K0 106 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 NUDT13Q86X67 352 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 TRIM42Q8IWZ5 723 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 C17orf47Q8NEP4 570 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 OR14L1PQ8NHC6 308 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 STAG3L4Q8TBR4 150 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 RDH11Q8TC12 318 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 HGDQ93099 445 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PERPQ96FX8 193 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 UCN2Q96RP3 112 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 CCL19Q99731 98 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 CPNE1Q99829 537 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 BDH2Q9BUT1 245 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 OSBPL11Q9BXB4 747 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 OR2B2Q9GZK3 357 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PIGMQ9H3S5 423 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 UBTD1Q9HAC8 227 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 TXNDC16Q9P2K2 825 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 NDRG3Q9UGV2 375 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 ADAM21Q9UKJ8 722 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PACSIN3Q9UKS6 424 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 PCDHGA11Q9Y5H2 935 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 WIF1Q9Y5W5 379 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 DSCAMO60469 2012 aa13.35□□□□□ -0.27
TRAF4-212ENST00000498540 HEATR5AQ86XA9 2040 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 LRRC14BA6NHZ5 514 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 CTIFO43310 598 aaKnown RBP13.34□□□□□ -0.27
TRAF4-212ENST00000498540 ICOSLGO75144 302 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 CDH16O75309 829 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 MTHFD2P13995 350 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 S1PR1P21453 382 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 CNTFP26441 200 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 GCKP35557 465 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 GP5P40197 560 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 STARP49675 285 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 DIO3P55073 304 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 GFRA1P56159 465 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 FAM27E3Q08E93 113 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 CUL3Q13618 768 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 KBTBD12Q3ZCT8 623 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 SLC30A6Q6NXT4 461 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 TMEM81Q6P7N7 255 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 ENPP6Q6UWR7 440 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 PRSS57Q6UWY2 283 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 WDSUB1Q8N9V3 476 aa13.34□□□□□ -0.27
TRAF4-212ENST00000498540 CTHRC1Q96CG8 243 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms