RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	CCDC94	Q9BW85	323 aa	Predicted RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF350	Q9GZX5	532 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	LSG1	Q9H089	658 aa	Known RBP	4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	NCOR1P1	Q9H4R4	102 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMEM206	Q9H813	350 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMED7	Q9Y3B3	224 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	ANKRD30A	Q9BXX3	1397 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	KIF15	Q9NS87	1388 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	AGL	P35573	1532 aa		4.26	□□□□□ -1.73
SF3B1-212	ENST00000496458	PFAS	O15067	1338 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	TEX48	A0A1B0GUV7	120 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	YDJC	A8MPS7	323 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMCO5B	A8MYB1	307 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	KBTBD13	C9JR72	458 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	CTDSPL	O15194	276 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	UROS	P10746	265 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ARF4	P18085	180 aa	Predicted RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ACKR3	P25106	362 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SSR1	P43307	286 aa	Known RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	MAGEA4	P43358	317 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SLC1A6	P48664	564 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	CAMLG	P49069	296 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	PTPRK	Q15262	1439 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	NCOA1	Q15788	1441 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458		Q1RN00	199 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF776	Q68DI1	518 aa	Predicted RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SLC25A24	Q6NUK1	477 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	C16orf87	Q6PH81	154 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ISLR2	Q6UXK2	745 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	KCTD9	Q7L273	389 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	NUFIP2	Q7Z417	695 aa	Known RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SERINC5	Q86VE9	423 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	NBPF5P	Q86XG9	351 aa	Predicted RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	RNF149	Q8NC42	400 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	OR7G3	Q8NG95	312 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	GPR148	Q8TDV2	347 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF75CP	Q92670	426 aa	Predicted RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	TEKT1	Q969V4	418 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	RFT1	Q96AA3	541 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF274	Q96GC6	653 aa	Predicted RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SERAC1	Q96JX3	654 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	PARK7	Q99497	189 aa	Known RBP	4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	CACNG6	Q9BXT2	260 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SLC39A8	Q9C0K1	460 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	S100A14	Q9HCY8	104 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	COX16	Q9P0S2	106 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	RERE	Q9P2R6	1566 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	PCSK1N	Q9UHG2	260 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	ITGA11	Q9UKX5	1188 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	MAST1	Q9Y2H9	1570 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	NAALAD2	Q9Y3Q0	740 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	CPQ	Q9Y646	472 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	CROCC2	H7BZ55	1655 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	FER1L5	A0AVI2	2057 aa		4.25	□□□□□ -1.73
SF3B1-212	ENST00000496458	SHANK2	Q9UPX8	1470 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	CROCC	Q5TZA2	2017 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	FAM205A	Q6ZU69	1335 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	GON4L	Q3T8J9	2241 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458		A0A1W2PQ72	361 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	SMIM30	A4D0T7	59 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ST8SIA3	O43173	380 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	TOP1	P11387	765 aa	Known RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	GZMA	P12544	262 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ANPEP	P15144	967 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	RPA1	P27694	616 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	SOAT1	P35610	550 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	RIPK4	P57078	832 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ACTR1A	P61163	376 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	FKBP1B	P68106	108 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCNA1	P78396	465 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	MAP2K1	Q02750	393 aa	Predicted RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZKSCAN8	Q15776	578 aa	Predicted RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	NEK5	Q6P3R8	708 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	MFSD7	Q6UXD7	560 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMEM64	Q6YI46	380 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	KLHL7	Q8IXQ5	586 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	LPCAT1	Q8NF37	534 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ST7L	Q8TDW4	575 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	BCL2L2	Q92843	193 aa	Predicted RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	MRPL38	Q96DV4	380 aa	Known RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	EEF2KMT	Q96G04	330 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF414	Q96IQ9	312 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	CNOT6L	Q96LI5	555 aa	Known RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCM2	Q9BSQ5	444 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ACPT	Q9BZG2	426 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	SLITRK2	Q9H156	845 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	DPH5	Q9H2P9	285 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	TM9SF3	Q9HD45	589 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	MED17	Q9NVC6	651 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	HMG20B	Q9P0W2	317 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	VPS18	Q9P253	973 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	B4GALT7	Q9UBV7	327 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	MRPL11	Q9Y3B7	192 aa	Known RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	CLTC	Q00610	1675 aa	Known RBP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	DUOX2	Q9NRD8	1548 aa		4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZBED9	Q6R2W3	1325 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	PLXNC1	O60486	1568 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	CNTLN	Q9NXG0	1405 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	RRBP1	Q9P2E9	1410 aa	Known RBP	4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms