RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CLEC12AQ5QGZ9 265 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TMPRSS11AQ6ZMR5 421 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ZNF793Q6ZN11 406 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CCDC80Q76M96 950 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 DEPDC4Q8N2C3 294 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 FCGR1BQ92637 280 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 MVB12BQ9H7P6 319 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 SYNPO2LQ9H987 977 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 AHSPQ9NZD4 102 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TRPC4Q9UBN4 977 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TLR4O00206 839 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 HMGN4O00479 90 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 PTTG1O95997 202 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ITGA2P17301 1181 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 EN2P19622 333 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 FCARP24071 287 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CD79BP40259 229 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 RFX2P48378 723 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 EIF4HQ15056 248 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ADAMTSL4Q6UY14 1074 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 OR6F1Q8NGZ6 308 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ASB15Q8WXK1 588 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 GFM1Q96RP9 751 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 BCL7BQ9BQE9 202 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 RPP25Q9BUL9 199 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 WDR26Q9H7D7 661 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 COMMD3Q9UBI1 195 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ZFR2Q9UPR6 939 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 STON1Q9Y6Q2 735 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ARID1BQ8NFD5 2236 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ISPDA4D126 451 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 NARSO43776 548 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 SLC28A2O43868 658 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 DPM1O60762 260 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TMCC2O75069 709 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 HBQ1P09105 142 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 GPC1P35052 558 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TIE1P35590 1138 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 UGT2B10P36537 528 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 SSR2P43308 183 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 HTR3AP46098 478 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CSNK1G2P78368 415 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CST6Q15828 149 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 SAXO2Q658L1 398 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 THOC7Q6I9Y2 204 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TYW3Q6IPR3 259 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 GALNT12Q8IXK2 581 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 TP53I13Q8NBR0 393 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 ARMC5Q96C12 935 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 MTERF3Q96E29 417 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 PDXPQ96GD0 296 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 CLCA3PQ9Y6N3 262 aa15.61■□□□□ 0.09
CCDC88B-210ENST00000494566 DOCK8Q8NF50 2099 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 ANKRD34BA5PLL1 514 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 CBLP22681 906 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 LIMS1P48059 325 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 RUNX3Q13761 415 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 HEPACAMQ14CZ8 416 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 GPR19Q15760 415 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 C2orf27AQ580R0 203 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 PLAG1Q6DJT9 500 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 IKBIPQ70UQ0 350 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 OR8K5Q8NH50 307 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 DOK4Q8TEW6 326 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 GATAD2BQ8WXI9 593 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 SMPDL3AQ92484 453 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 NEURL3Q96EH8 262 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 DIRAS2Q96HU8 199 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 ART5Q96L15 291 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 DPH7Q9BTV6 452 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 THAP10Q9P2Z0 257 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 GPSM3Q9Y4H4 160 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 SEMA3DO95025 777 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 CCT3P49368 545 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 PRKCDQ05655 676 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 KRT33BQ14525 404 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 ZNF79Q15937 498 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 ATAT1Q5SQI0 421 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 FBXO46Q6PJ61 603 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 C1GALT1C1Q96EU7 318 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 CITED4Q96RK1 184 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 HDAC8Q9BY41 377 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 RHBGQ9H310 441 aa15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 SPIN1Q9Y657 262 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-210ENST00000494566 COL4A3Q01955 1670 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 IFNA14P01570 189 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 ATXN8OSP0DMR3 200 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 REEP5Q00765 189 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 DUSP2Q05923 314 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 SPHARQ15513 63 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 PYDC2Q56P42 97 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 NDUFAF5Q5TEU4 345 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 TCTN3Q6NUS6 607 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 KIAA1211LQ6NV74 962 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 LYPD8Q6UX82 237 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 USP30Q70CQ3 517 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 RTL10Q7L3V2 364 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 CCDC190Q86UF4 302 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 NUDT13Q86X67 352 aa15.59■□□□□ 0.09
CCDC88B-210ENST00000494566 OR5P2Q8WZ92 322 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms