RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CDC123O75794 336 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 OLFM2O95897 454 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 GASTP01350 101 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 IFNGP01579 166 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 DRD2P14416 443 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 IL1RNP18510 177 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 AKT2P31751 481 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 MC3RP41968 323 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 OR2B6P58173 313 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 NKX3-2P78367 333 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 NDUFA9Q16795 377 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 WSCD2Q2TBF2 565 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 FAM214AQ32MH5 1076 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ZFP69Q49AA0 526 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 CEP78Q5JTW2 689 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF761Q86XN6 746 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 PTOV1Q86YD1 416 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ACOT4Q8N9L9 421 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 CAMKVQ8NCB2 501 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 WDR20Q8TBZ3 569 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 GATAD2BQ8WXI9 593 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 TMCO6Q96DC7 493 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 MRPL48Q96GC5 212 aaKnown RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 TRNT1Q96Q11 434 aaKnown RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 TREX2Q9BQ50 279 aaPredicted RBP11.02□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF221Q9UK13 617 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 N6AMT1Q9Y5N5 214 aa11.02□□□□□ -0.65
NPHP4-204ENST00000460696 TRBV4-1A0A0J9YWV2 114 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 B4DGG1 531 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 GFRA2O00451 464 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 SOX1O00570 391 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 EMC8O43402 210 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 B4GALT2O60909 372 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 CDK1P06493 297 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 IFI30P13284 250 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 CHMP24386 653 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 GJA4P35212 333 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 DMPKQ09013 629 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ADPRMQ3LIE5 342 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 IDNKQ5T6J7 187 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 TMEM215Q68D42 235 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 RTL4Q6ZR62 310 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ALDH16A1Q8IZ83 802 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 C10orf111Q8N326 155 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 UXS1Q8NBZ7 420 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 OR51A7Q8NH64 312 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 BBS10Q8TAM1 723 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 C11orf24Q96F05 449 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 INSM2Q96T92 566 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 RPP25Q9BUL9 199 aaKnown RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 HRASLS2Q9NWW9 162 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ZSCAN32Q9NX65 697 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 NKIRAS2Q9NYR9 191 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 SEC14L4Q9UDX3 406 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 IFT52Q9Y366 437 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 SIP14410 1827 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 EPOPA6NHQ4 379 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 HMGN1P05114 100 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PRKAR1AP10644 381 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 C5AR1P21730 350 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 MNX1P50219 401 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 NNATQ16517 81 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 CXXC5Q7LFL8 322 aaKnown RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 C12orf40Q86WS4 652 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 NRROSQ86YC3 692 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 OR52E1Q8NGJ3 308 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 OR52P1PQ8NH57 321 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 C17orf113A0A1B0GUU1 675 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 OR6C74A6NCV1 312 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 HCN1O60741 890 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 BLVRAP53004 296 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 RELAQ04206 551 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PRDX1Q06830 199 aaKnown RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 FIGNL1Q6PIW4 674 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ASPGQ86U10 573 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 OR9A2Q8NGT5 310 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 SUN3Q8TAQ9 357 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 FAM46AQ96IP4 442 aaKnown RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 HRASLS5Q96KN8 279 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 GPC6Q9Y625 555 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF638Q14966 1978 aaKnown RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 A8MV72 311 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PLPP1O14494 284 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PTHP01270 115 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ACADLP28330 430 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 GP2P55259 537 aaKnown RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 SLC35A2P78381 396 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 IRF4Q15306 451 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 KLHL36Q8N4N3 616 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 DNAJC22Q8N4W6 341 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 LINC00471Q8N535 108 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 FBXO15Q8NCQ5 510 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 OR6K6Q8NGW6 343 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 SNX33Q8WV41 574 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 CDCA3Q99618 268 aaPredicted RBP11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PELI2Q9HAT8 420 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 ANKHQ9HCJ1 492 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PRSS16Q9NQE7 514 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 PHF11Q9UIL8 331 aa11.01□□□□□ -0.65
NPHP4-204ENST00000460696 CA5BQ9Y2D0 317 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms