RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 AHCYP23526 432 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ATP5C1P36542 298 aaKnown RBP10.12□□□□□ -0.79
USP54-204ENST00000422491 ACLYP53396 1101 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 RPS13P62277 151 aaKnown RBP10.12□□□□□ -0.79
USP54-204ENST00000422491 CDK5Q00535 292 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 BTN1A1Q13410 526 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ATP13A5Q4VNC0 1218 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 VASNQ6EMK4 673 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 KIAA1211LQ6NV74 962 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 CD300LDQ6UXZ3 194 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 B3GLCTQ6Y288 498 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 SHFQ7M4L6 423 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 PRICKLE2Q7Z3G6 844 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 KIAA0907Q7Z7F0 614 aaPredicted RBP10.12□□□□□ -0.79
USP54-204ENST00000422491 OR5M3Q8NGP4 307 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 OR10Z1Q8NGY1 313 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 NXPE2Q96DL1 559 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 RADILQ96JH8 1075 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 SEPT5Q99719 369 aaPredicted RBP10.12□□□□□ -0.79
USP54-204ENST00000422491 REG4Q9BYZ8 158 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 SLC7A5P2Q9GIP4 190 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 TMEM161AQ9NX61 479 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 RDH8Q9NYR8 311 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 FBXW2Q9UKT8 454 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 VWA8A3KMH1 1905 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 MEIKINA0A087WXM9 373 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 TEX13CA0A0J9YWL9 993 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 A0A1B0GVI7 797 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 C2orf92A0A1B0GVN3 265 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 IRGMA1A4Y4 181 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 G3V3Q6 166 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 GPR171O14626 319 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 VNN2O95498 520 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 GBAP04062 536 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 GKP32189 559 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 RAB14P61106 215 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 BCL2L1Q07817 233 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ZNF155Q12901 538 aaPredicted RBP10.12□□□□□ -0.79
USP54-204ENST00000422491 DEF8Q6ZN54 512 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 OR52H1Q8NGJ2 320 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 RAET1EQ8TD07 263 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ACOT12Q8WYK0 555 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ST8SIA4Q92187 359 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 SLC9A6Q92581 669 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 PPCDCQ96CD2 204 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 LINC00052Q96N35 136 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 ADAM2Q99965 735 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 CDCP1Q9H5V8 836 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 TBC1D17Q9HA65 648 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 DLL4Q9NR61 685 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 TRPM5Q9NZQ8 1165 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 MAB21L2Q9Y586 359 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 NUBP2Q9Y5Y2 271 aa10.12□□□□□ -0.79
USP54-204ENST00000422491 LOC105369274A0A096LPK9 316 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 TUBAL3A6NHL2 446 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 H3BUI4 141 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 DVL2O14641 736 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 KPNA5O15131 536 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CASC3O15234 703 aaKnown RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 ATG13O75143 517 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 NME6O75414 186 aaPredicted RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 TCRBP04435 133 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 IFNA16P05015 189 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 SULT1A3P0DMM9 295 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 SULT1A4P0DMN0 295 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 MMP11P24347 488 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 DNASE1P24855 282 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CORO1AP31146 461 aaKnown RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 SOAT1P35610 550 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 SLC1A3P43003 542 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 MTNR1AP48039 350 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 DCDC1P59894 354 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 MINDY4Q4G0A6 757 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CTXN3Q4LDR2 81 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 EOGTQ5NDL2 527 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 GDF6Q6KF10 455 aaPredicted RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 PLEKHH3Q7Z736 793 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 ZER1Q7Z7L7 766 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 LRRC28Q86X40 367 aaPredicted RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 OR4N4Q8N0Y3 316 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 FBXO22Q8NEZ5 403 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 DBF4BQ8NFT6 615 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 SLC38A5Q8WUX1 472 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 RIT1Q92963 219 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CLP1Q92989 425 aaKnown RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 FBXW5Q969U6 566 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 GPA33Q99795 319 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 TMEM175Q9BSA9 504 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 NLNQ9BYT8 704 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 SHARPINQ9H0F6 387 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 DPAGT1Q9H3H5 408 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 OSGEPL1Q9H4B0 414 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 ENAMQ9NRM1 1142 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CBLCQ9ULV8 474 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CLCA2Q9UQC9 943 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 CSNK1G3Q9Y6M4 447 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 hCG_1807616A0A1W2PRN6 198 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 NPIPB15A6NHN6 443 aaPredicted RBP10.11□□□□□ -0.79
USP54-204ENST00000422491 CD8B2A6NJW9 211 aa10.11□□□□□ -0.79
USP54-204ENST00000422491 KLHL18O94889 574 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms