RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 INAQ16352 499 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SLC25A35Q3KQZ1 300 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 ACER2Q5QJU3 275 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PROKR2Q8NFJ6 384 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF671Q8TAW3 534 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SPTSSAQ969W0 71 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 TMEM68Q96MH6 324 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 EHD3Q9NZN3 535 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 GRHPRQ9UBQ7 328 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 NOVA2Q9UNW9 492 aaKnown RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 USP22Q9UPT9 525 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PCNX1Q96RV3 2341 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 EME2A4GXA9 379 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 GLOD5A6NK44 160 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 NRG2O14511 850 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 QDPRP09417 244 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 FAM228BP0C875 321 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 BMI1P35226 326 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 RFC3P40938 356 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 OR12D2P58182 307 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CLCQ05315 142 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SP5Q6BEB4 398 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CCSAPQ6IQ19 270 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF549Q6P9A3 640 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 THSD4Q6ZMP0 1018 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 NAGSQ8N159 534 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 ZBTB8BQ8NAP8 495 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 GALNT11Q8NCW6 608 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PRSS33Q8NF86 280 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CLDN23Q96B33 292 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 S1PR5Q9H228 398 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 VRTNQ9H8Y1 702 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 COMMD3-BMI1R4GMX3 469 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 BLOC1S5-TXNDC5H3BN57 136 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 LCATP04180 440 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 ZSCAN5DPP0CG00 497 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CD99P14209 185 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PIK3CBP42338 1070 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 HK2P52789 917 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 RPS16P62249 146 aaKnown RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CBLBQ13191 982 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 MOGSQ13724 837 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 TCTN3Q6NUS6 607 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CDHR3Q6ZTQ4 885 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 FAM110BQ8TC76 370 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 C8orf44Q96CB5 159 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 C1QTNF2Q9BXJ5 285 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 OR51B5Q9H339 312 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PRMT8Q9NR22 394 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 P2RX2Q9UBL9 471 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 MGAT4BQ9UQ53 548 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SH3GLB1Q9Y371 365 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CACNA1AO00555 2505 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SMAD6O43541 496 aaKnown RBP7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CCL4P13236 92 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 TBXA2RP21731 343 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CHN2P52757 468 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 STC1P52823 247 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 RTP5Q14D33 572 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 CCDC80Q76M96 950 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SPRED1Q7Z699 444 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 GLCCI1Q86VQ1 547 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 SLC43A2Q8N370 569 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 VWA5B2Q8N398 1253 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 C3orf58Q8NDZ4 430 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 ASB12Q8WXK4 309 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 RSC1A1Q92681 617 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PGAM5Q96HS1 289 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 TSGA13Q96PP4 275 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 HBEGFQ99075 208 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 COMMD4Q9H0A8 199 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 KCMF1Q9P0J7 381 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 IKZF3Q9UKT9 509 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 PCDHGA7Q9Y5G6 932 aa7.93□□□□□ -1.14
HMGB1-203ENST00000341423 KDM4BO94953 1096 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 TGIF1Q15583 401 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ALG10Q5BKT4 473 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 S100A7AQ86SG5 101 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 PIANPQ8IYJ0 282 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CARFQ8N187 725 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF384Q8TF68 577 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 LCORQ96JN0 433 aaPredicted RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 NSMCE2Q96MF7 247 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 NUDT9Q9BW91 350 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CLEC4MQ9H2X3 399 aaPredicted RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CRLF2Q9HC73 371 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SAMD4AQ9UPU9 718 aaKnown RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF814B7Z6K7 855 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ANHXE9PGG2 379 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 H7C0S8 307 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 RNF225M0QZC1 329 aaPredicted RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 AZIN1O14977 448 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 WDR1O75083 606 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 NIPSNAP2O75323 286 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 GPIP06744 558 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ITGA5P08648 1049 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 GNLYP22749 145 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 GZMKP49863 264 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CDH11P55287 796 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CTXN1P60606 82 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms