RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OR10G2Q8NGC3 310 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TANKQ92844 425 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TMED9Q9BVK6 235 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ST6GALNAC4Q9H4F1 302 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ACP6Q9NPH0 428 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ANKMY1Q9P2S6 941 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SH2B3Q9UQQ2 575 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 PEX16Q9Y5Y5 336 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TRIP12Q14669 1992 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LOC100509620A0A075B734 347 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SLC22A2O15244 555 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 BANF1O75531 89 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF821O75541 412 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SFTPCP11686 197 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ATF6P18850 670 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 VIPR2P41587 438 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 IRF9Q00978 393 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ZMAT1Q5H9K5 638 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 OR4C11Q6IEV9 310 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LARP4Q71RC2 724 aaKnown RBP eCLIP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SLC35F5Q8WV83 523 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 TBC1D20Q96BZ9 403 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SGCZQ96LD1 299 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MICU1Q9BPX6 476 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 DPH7Q9BTV6 452 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 MECRQ9BV79 373 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 LRRC3Q9BY71 257 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 DPAGT1Q9H3H5 408 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 FABP12A6NFH5 140 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PIP5K1CO60331 668 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CLN5O75503 358 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ECI2O75521 394 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CDK6Q00534 326 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RDH10Q8IZV5 341 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PGAM4Q8N0Y7 254 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PIAS4Q8N2W9 510 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 FCAMRQ8WWV6 532 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SLC39A7Q92504 469 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 NKD2Q969F2 451 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SENP5Q96HI0 755 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 C7orf50Q9BRJ6 194 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 EHD1Q9H4M9 534 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GAREM1Q9H706 876 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TMLHEQ9NVH6 421 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RABL2AQ9UBK7 228 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ABCG2Q9UNQ0 655 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RABL2BQ9UNT1 228 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CAMTA1Q9Y6Y1 1673 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 H3BNC9 293 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 M0QZ24 198 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CCL22O00626 93 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 AIREO43918 545 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SCRG1O75711 98 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZBTB11O95625 1053 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ADH7P40394 386 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 FRKP42685 505 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 F2RL1P55085 397 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RPS23P62266 143 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 FBXO48Q5FWF7 155 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 C9orf152Q5JTZ5 239 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GPR107Q5VW38 600 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 LRFN4Q6PJG9 635 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PRR18Q8N4B5 295 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 AQP11Q8NBQ7 271 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZFPM2Q8WW38 1151 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SLC2A13Q96QE2 648 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 HBEGFQ99075 208 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ENAMQ9NRM1 1142 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ITGB1BP2Q9UKP3 347 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 HIF3AQ9Y2N7 669 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PCM1Q15154 2024 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 NFKBIEO00221 500 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 EI24O14681 340 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ALOX15BO15296 676 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 MRPL33O75394 65 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TRMUO75648 421 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ATP6V1G2O95670 118 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 IL3P08700 152 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 EBLN1P0CF75 366 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 MXD1Q05195 221 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 DNASE1L3Q13609 305 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF169Q14929 603 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 AGAP7PQ5VUJ5 663 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TRIM46Q7Z4K8 759 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SLC51AQ86UW1 340 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 OR2T33Q8NG76 320 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 UPRTQ96BW1 309 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZC3HAV1LQ96H79 300 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 AGAP4Q96P64 663 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 OR6C1Q96RD1 312 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 REEP4Q9H6H4 257 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ELOVL3Q9HB03 270 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF160Q9HCG1 818 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC1BQ9P126 229 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 STEAP1Q9UHE8 339 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PRELID3BQ9Y3B1 194 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TRBC2A0A5B9 178 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 IFNA4P05014 189 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 POU3F4P49335 361 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SIM1P81133 766 aaPredicted RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms