RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TMEM198	Q66K66	360 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	DESI1	Q6ICB0	168 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	KLC3	Q6P597	504 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	CCDC91	Q7Z6B0	441 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	MMP21	Q8N119	569 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	ADIPOR1	Q96A54	375 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	TP53INP1	Q96A56	240 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	PHF21B	Q96EK2	531 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	NSUN5	Q96P11	429 aa	Known RBP	9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	SERPINI1	Q99574	410 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	TIMP4	Q99727	224 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	SH3GL2	Q99962	352 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	MRPL1	Q9BYD6	325 aa	Known RBP	9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	CLEC4M	Q9H2X3	399 aa	Predicted RBP	9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	UBQLN3	Q9H347	655 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	ST6GALNAC2	Q9UJ37	374 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	CAMK2A	Q9UQM7	478 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	DTX4	Q9Y2E6	619 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	PLEKHA6	Q9Y2H5	1048 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	C15orf41	Q9Y2V0	281 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	PCDHGB3	Q9Y5G1	929 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	TNPO3	Q9Y5L0	923 aa	Known RBP	9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	NPFFR2	Q9Y5X5	522 aa		9.64	□□□□□ -0.87
LSM4-205	ENST00000597776	NIN	Q8N4C6	2090 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ANKHD1	Q8IWZ3	2542 aa	Known RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ARHGAP21	Q5T5U3	1957 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	KIAA1549	Q9HCM3	1950 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CCDC189	A1A4V9	331 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CAPN14	A8MX76	684 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	AHRR	A9YTQ3	701 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	SYT5	O00445	386 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	DVL2	O14641	736 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	SEMA3D	O95025	777 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	EPPIN	O95925	133 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	HPN	P05981	417 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ABCD3	P28288	659 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CASQ1	P31415	396 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CEACAM8	P31997	349 aa	Predicted RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CASP3	P42574	277 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ASCL1	P50553	236 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	XK	P51811	444 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CCNG1	P51959	295 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	AGFG1	P52594	562 aa	Known RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ZNF136	P52737	540 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	FUT7	Q11130	342 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	TRAF3	Q13114	568 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CEBPE	Q15744	281 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	FLYWCH1	Q4VC44	716 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	EIPR1	Q53HC9	387 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	WIPI1	Q5MNZ9	446 aa	Predicted RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	FRG2	Q64ET8	278 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	TTC19	Q6DKK2	380 aa	Predicted RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	POMZP3	Q6PJE2	187 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	SYT10	Q6XYQ8	523 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	RPS27L	Q71UM5	84 aa	Known RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	PACS2	Q86VP3	889 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	LACC1	Q8IV20	430 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	SIMC1	Q8NDZ2	872 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	OR4K14	Q8NGD5	310 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	RNASE6	Q93091	150 aa	Known RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ATP6V1E2	Q96A05	226 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	FRG2B	Q96QU4	278 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	FOXC2	Q99958	501 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ANGPTL4	Q9BY76	406 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	NXF5	Q9H1B4	397 aa	Known RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	OR10A5	Q9H207	317 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CXXC4	Q9H2H0	198 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ZBTB26	Q9HCK0	441 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	RASSF1	Q9NS23	344 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	FARSB	Q9NSD9	589 aa	Known RBP	9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	ZDHHC18	Q9NUE0	388 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	PSD3	Q9NYI0	1048 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	NINJ2	Q9NZG7	142 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	PCTP	Q9UKL6	214 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	CBLC	Q9ULV8	474 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776	AKAP6	Q13023	2319 aa		9.63	□□□□□ -0.87
LSM4-205	ENST00000597776		A0A1B0GTL3	188 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	C2orf72	A6NCS6	295 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776		A6NNC1	897 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	GNB5	O14775	395 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	SNX4	O95219	450 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	ABCB1	P08183	1280 aa	Predicted RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	CD99	P14209	185 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	CPM	P14384	443 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	POR	P16435	677 aa	Predicted RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	BMP7	P18075	431 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	TSPAN8	P19075	237 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	S1PR1	P21453	382 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	GPX3	P22352	226 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	TACR1	P25103	407 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	FEN1	P39748	380 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	TMED10	P49755	219 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	MAPK12	P53778	367 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	NRG3	P56975	720 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	DUSP2	Q05923	314 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	EXOSC7	Q15024	291 aa	Known RBP	9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	FBXL19-AS1	Q494R0	122 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	CCNYL2	Q5T2Q4	361 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	C6orf163	Q5TEZ5	329 aa		9.62	□□□□□ -0.87
LSM4-205	ENST00000597776	NSUN5P2	Q63ZY6	315 aa		9.62	□□□□□ -0.87

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