RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 SLAMF7Q9NQ25 335 aa9.78□□□□□ -0.84
LIG3-203ENST00000585370 UCKL1Q9NWZ5 548 aa9.78□□□□□ -0.84
LIG3-203ENST00000585370 NLGN3Q9NZ94 848 aa9.78□□□□□ -0.84
LIG3-203ENST00000585370 NTMQ9P121 344 aa9.78□□□□□ -0.84
LIG3-203ENST00000585370 SEMA5BQ9P283 1151 aa9.78□□□□□ -0.84
LIG3-203ENST00000585370 IFT80Q9P2H3 777 aaPredicted RBP9.78□□□□□ -0.84
LIG3-203ENST00000585370 ATMQ13315 3056 aa9.78□□□□□ -0.84
LIG3-203ENST00000585370 COL5A1P20908 1838 aaPredicted RBP9.77□□□□□ -0.84
LIG3-203ENST00000585370 SAC3D1A6NKF1 404 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 DUXAA6NLW8 204 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 PLOD2O00469 737 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ACOX3O15254 700 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ASNA1O43681 348 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 DUX1O43812 170 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 SERPINB7O75635 380 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 RFPL3O75679 317 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 HPRP00739 348 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 SEMG1P04279 462 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 FABP3P05413 133 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 NUDT7P0C024 238 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 PORP16435 677 aaPredicted RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 ZNF23P17027 643 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 CKMT2P17540 419 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 MATN1P21941 496 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 PPM1FP49593 454 aaPredicted RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 CDK9P50750 372 aaKnown RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 XKP51811 444 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 RAB38P57729 211 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 SQSTM1Q13501 440 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 FAM214AQ32MH5 1076 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 RFX4Q33E94 735 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 WDR74Q6RFH5 385 aaPredicted RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 KANSL1Q7Z3B3 1105 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ARMC8Q8IUR7 673 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 CCDC116Q8IYX3 515 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 LRRC25Q8N386 305 aaPredicted RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 SLC25A45Q8N413 288 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 CBR4Q8N4T8 237 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 OR5AK3PQ8NH89 298 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ZCCHC10Q8TBK6 192 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 NCSTNQ92542 709 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 N4BP2L2Q92802 583 aaPredicted RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 TMBIM1Q969X1 311 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ELP4Q96EB1 424 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 CRELD1Q96HD1 420 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 SLC35G5Q96KT7 338 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 C10orf90Q96M02 699 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ZNF347Q96SE7 839 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 SLC29A1Q99808 456 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 DPYSL5Q9BPU6 564 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 SPATA5L1Q9BVQ7 753 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 NTN4Q9HB63 628 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 FAM60AQ9NP50 221 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 ZCCHC3Q9NUD5 404 aaKnown RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 CALML5Q9NZT1 146 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 C5AR2Q9P296 337 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 PTGFRNQ9P2B2 879 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 P2RX2Q9UBL9 471 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 OAZ3Q9UMX2 235 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 LIPT1Q9Y234 373 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 MRPS33Q9Y291 106 aaKnown RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 PADI2Q9Y2J8 665 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 AP4B1Q9Y6B7 739 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 RNF215Q9Y6U7 377 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 V9GYQ6 96 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 MDC1Q14676 2089 aaKnown RBP9.77□□□□□ -0.85
LIG3-203ENST00000585370 PTPRQQ9UMZ3 2332 aa9.77□□□□□ -0.85
LIG3-203ENST00000585370 NUP214P35658 2090 aaPredicted RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 A0A087WV62 115 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 IGHV1OR21-1A0A087WYE8 117 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 FITM1A5D6W6 292 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 GLOD5A6NK44 160 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 G3V2T6 193 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 H0YAE9 185 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 M0QX08 132 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 UPK1AO00322 258 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 CYR61O00622 381 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 TOX3O15405 576 aaPredicted RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 SDC3O75056 442 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 NSA2O95478 260 aaKnown RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 GPR75O95800 540 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 C9P02748 559 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 TFPTP0C1Z6 253 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 MSL3P1P0C860 447 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 CDK4P11802 303 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 RNH1P13489 461 aaKnown RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 ALDH4A1P30038 563 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 FEN1P39748 380 aaKnown RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 MLLT3P42568 568 aaPredicted RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 AVPR1BP47901 424 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 ARL4DP49703 201 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 ALDH3A2P51648 485 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 PCBP3P57721 371 aaKnown RBP9.76□□□□□ -0.85
LIG3-203ENST00000585370 PPP1CAP62136 330 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 HSD11B2P80365 405 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 TARDBPQ13148 414 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIG3-203ENST00000585370 DAG1Q14118 895 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 GRM7Q14831 915 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 NKG7Q16617 165 aa9.76□□□□□ -0.85
LIG3-203ENST00000585370 IFI44LQ53G44 452 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms