RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 C2orf92A0A1B0GVN3 265 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 A0A1W2PPQ1 181 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CIB4A0PJX0 185 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 POM121BA6NF01 834 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 OR2AT4A6NND4 320 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 LGALS16A8MUM7 142 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TMEM238C9JI98 176 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 M0QZK8 103 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 AP4M1O00189 453 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 KPNA3O00505 521 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 PPP6CO00743 305 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 STX16O14662 325 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ZNF213O14771 459 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PMM2O15305 246 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 INSIG1O15503 277 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CYTIPO60759 359 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PPP6R2O75170 966 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 GATBO75879 557 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 OR2B3O76000 313 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 JTBO76095 146 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 GABARAPO95166 117 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TDP2O95551 362 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PPBPP02775 128 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RLN2P04090 185 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 IFNA6P05013 189 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CSF1RP07333 972 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CHRNGP07510 517 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 FHP07954 510 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACSM4P0C7M7 580 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SUPT20HL2P0C7V6 817 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TRIM49P0CI25 452 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TRIM49CP0CI26 452 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 STAG3L1P0CL83 205 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PAX1P15863 534 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CTPS1P17812 591 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MYF6P23409 242 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 DNASE1P24855 282 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 YWHAQP27348 245 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MAPK4P31152 587 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 THBS4P35443 961 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SERPINF1P36955 418 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 DPP6P42658 865 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 GRK6P43250 576 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MAGEA1P43355 309 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 HSPA7P48741 367 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RGS6P49758 472 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MTHFSP49914 203 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 NUDT6P53370 316 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CRYBB1P53674 252 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 ATXN3P54252 364 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 PROK1P58294 105 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 KIAA1024LP59773 190 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACTBP60709 375 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PRPS1P60891 318 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACTA2P62736 377 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TRA2BP62995 288 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACTG1P63261 375 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACTG2P63267 376 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACTC1P68032 377 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ACTA1P68133 377 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SLC7A9P82251 487 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MRPS11P82912 194 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 NHLH1Q02575 133 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 GAD2Q05329 585 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TSPAN31Q12999 210 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 EIF4EBP2Q13542 120 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 VEZF1Q14119 521 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 DGCR6Q14129 220 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MESDQ14696 234 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 GRM3Q14832 879 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RPS6KA2Q15349 733 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CARTPTQ16568 116 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 HIST2H2ACQ16777 129 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 MICBQ29980 383 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MICAQ29983 383 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TWISTNBQ3B726 338 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 PTCHD3Q3KNS1 767 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 UGT3A2Q3SY77 523 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 FAM69AQ5T7M9 428 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SLC9C2Q5TAH2 1124 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 BSPRYQ5W0U4 402 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ARHGAP17Q68EM7 881 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 JADE1Q6IE81 842 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ETFRF1Q6IPR1 90 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PMF1Q6P1K2 205 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 FAM199XQ6PEV8 388 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 METAP1DQ6UB28 335 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 ZDHHC24Q6UX98 284 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 IL20RBQ6UXL0 311 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SPNS3Q6ZMD2 512 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CERS6Q6ZMG9 384 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ERN2Q76MJ5 926 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 PARS2Q7L3T8 475 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 SHFQ7M4L6 423 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 BHLHA15Q7RTS1 189 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 PIWIL3Q7Z3Z3 882 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 P4HA3Q7Z4N8 544 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 WDR53Q7Z5U6 358 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 LHFPL4Q7Z7J7 247 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SERINC5Q86VE9 423 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms