RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 USP39Q53GS9 565 aaKnown RBP12.63□□□□□ -0.39
CLK3-206ENST00000562078 ZNF697Q5TEC3 545 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 LIPKQ5VXJ0 399 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 HTR3DQ70Z44 454 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 LUZP2Q86TE4 346 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 OR2T4Q8NH00 348 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 EEF1AKMT1Q8WVE0 214 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 NXPE2Q96DL1 559 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 OR52E6Q96RD3 313 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 ZBTB18Q99592 522 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 ANKRA2Q9H9E1 313 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 IMPAD1Q9NX62 359 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 SEC14L4Q9UDX3 406 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 MSRAQ9UJ68 235 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 FBXL2Q9UKC9 423 aa12.63□□□□□ -0.39
CLK3-206ENST00000562078 TRBV5-3A0A0A0MS03 114 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 RGS11O94810 467 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CCNDBP1O95273 360 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 SEMG1P04279 462 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 STK19P49842 368 aaPredicted RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 CACNG1Q06432 222 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 BCL2L1Q07817 233 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 SF3A2Q15428 464 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 PDSS1Q5T2R2 415 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 PLAG1Q6DJT9 500 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 PDE12Q6L8Q7 609 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 GPR155Q7Z3F1 870 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CPXM2Q8N436 756 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 NKAPQ8N5F7 415 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 OR9Q1Q8NGQ5 310 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 PMM1Q92871 262 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 MTFMTQ96DP5 389 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 MS4A3Q96HJ5 214 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 KCNJ15Q99712 375 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 INPP5KQ9BT40 448 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 DPH7Q9BTV6 452 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 TXNL4BQ9NX01 149 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 SSR3Q9UNL2 185 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 EXO1Q9UQ84 846 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 PCDHGB7Q9Y5F8 929 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 PCDHGA2Q9Y5H1 932 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 A8MXK9 166 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 LEFTY2O00292 366 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CSO75390 466 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 SDHBP21912 280 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 PTGER3P43115 390 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CAPZA2P47755 286 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 GDI2P50395 445 aaKnown RBP12.62□□□□□ -0.39
CLK3-206ENST00000562078 ITGA1P56199 1179 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CAMK2DQ13557 499 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 TEAD4Q15561 434 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 MPPE1Q53F39 396 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CDKL4Q5MAI5 379 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 C11orf96Q7Z7L8 435 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 CMTM8Q8IZV2 173 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 SLC5A8Q8N695 610 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 SYT14Q8NB59 555 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 DENND6BQ8NEG7 585 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 METTL6Q8TCB7 284 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 KCNJ9Q92806 393 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 TPD52L3Q96J77 140 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 ACTR10Q9NZ32 417 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 SH3BP4Q9P0V3 963 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 KLF15Q9UIH9 416 aa12.62□□□□□ -0.39
CLK3-206ENST00000562078 ABCD4O14678 606 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 LRRTM2O43300 516 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 BNIP3LO60238 219 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 APOC3P02656 99 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 LPLP06858 475 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 HLA-EP13747 358 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 DNASE1P24855 282 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 HNF1BP35680 557 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 CCR2P41597 374 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 CTSOP43234 321 aaPredicted RBP12.61□□□□□ -0.39
CLK3-206ENST00000562078 IL2P60568 153 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 DSG2Q14126 1118 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 ABRAXAS2Q15018 415 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 NHLRC3Q5JS37 347 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 HSDL2Q6YN16 418 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 GDPGP1Q6ZNW5 385 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 BMPERQ8N8U9 685 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 OR56A4Q8NGH8 313 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 OR4D10Q8NGI6 311 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 DPYSL5Q9BPU6 564 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 NIPSNAP1Q9BPW8 284 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 SLC46A2Q9BY10 475 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 CCL26Q9Y258 94 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 LSM2Q9Y333 95 aaKnown RBP12.61□□□□□ -0.39
CLK3-206ENST00000562078 HCFC2Q9Y5Z7 792 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 GAPDHSO14556 408 aaPredicted RBP12.61□□□□□ -0.39
CLK3-206ENST00000562078 KPNA5O15131 536 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 SULT1B1O43704 296 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 TPST2O60704 377 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 LGI1O95970 557 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 IGSF6O95976 241 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 IL1AP01583 271 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 TRBC1P01850 177 aa12.61□□□□□ -0.39
CLK3-206ENST00000562078 MAPK1P28482 360 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms