RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ZNF347Q96SE7 839 aa11.91□□□□□ -0.5
USP3-213ENST00000559711 ZNF607Q96SK3 696 aa11.91□□□□□ -0.5
USP3-213ENST00000559711 TREX2Q9BQ50 279 aaPredicted RBP11.91□□□□□ -0.5
USP3-213ENST00000559711 ACTRT3Q9BYD9 372 aa11.91□□□□□ -0.5
USP3-213ENST00000559711 SPRTNQ9H040 489 aaPredicted RBP11.91□□□□□ -0.5
USP3-213ENST00000559711 GABARAPL1Q9H0R8 117 aa11.91□□□□□ -0.5
USP3-213ENST00000559711 C19orf53Q9UNZ5 99 aaPredicted RBP11.91□□□□□ -0.5
USP3-213ENST00000559711 CLCA2Q9UQC9 943 aa11.91□□□□□ -0.5
USP3-213ENST00000559711 GPC6Q9Y625 555 aaPredicted RBP11.91□□□□□ -0.5
USP3-213ENST00000559711 THADAQ6YHU6 1953 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 LAMA1P25391 3075 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 A0A087WV62 115 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 H0YAE9 185 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 PLOD3O60568 738 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 LDB3O75112 727 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 DIRAS1O95057 198 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 SNAP29O95721 258 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 MSL3P1P0C860 447 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 NR2F1P10589 423 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 MYF5P13349 255 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 RNH1P13489 461 aaKnown RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 ITGA2P17301 1181 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 PPP2R1BP30154 601 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 CSF2RBP32927 897 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 CAPGP40121 348 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 CRISP3P54108 245 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 ADARB1P78563 741 aaKnown RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 FUT5Q11128 374 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 PPP1R8Q12972 351 aaKnown RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 GRM7Q14831 915 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 TMEM154Q6P9G4 183 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 KMT5CQ86Y97 462 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 GATAD2AQ86YP4 633 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 SLC44A2Q8IWA5 706 aaPredicted RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 D2HGDHQ8N465 521 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 SMYD1Q8NB12 490 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 BBS10Q8TAM1 723 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 CEP76Q8TAP6 659 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 ZNF675Q8TD23 568 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 RASSF5Q8WWW0 418 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 SLC41A2Q96JW4 573 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 MS4A4EQ96PG1 132 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 OR7D2Q96RA2 312 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 ZNF300Q96RE9 604 aaPredicted RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 YIPF4Q9BSR8 244 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 RSPO3Q9BXY4 272 aaPredicted RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 ANKRA2Q9H9E1 313 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 SMURF2Q9HAU4 748 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 CAPN10Q9HC96 672 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 DDX18Q9NVP1 670 aaKnown RBP11.9□□□□□ -0.5
USP3-213ENST00000559711 KLHL3Q9UH77 587 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 SCOCQ9UIL1 159 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 LIPT1Q9Y234 373 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 PCDHGB5Q9Y5G0 923 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 PCDHGB3Q9Y5G1 929 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 U3KQV3 271 aa11.9□□□□□ -0.5
USP3-213ENST00000559711 BDP1A6H8Y1 2624 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 LY6G6EA0A0G2JKS1 128 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 A0A0G2JPF8 293 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 DUXAA6NLW8 204 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 EIF4E1BA6NMX2 242 aaKnown RBP11.89□□□□□ -0.51
USP3-213ENST00000559711 HNRNPCL2B2RXH8 293 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 HNRNPCL3B7ZW38 293 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 H0YIG0 161 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 SERPINB7O75635 380 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 RECKO95980 971 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 SLC35E2P0CK97 266 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 HNRNPCL4P0DMR1 293 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 THRBP10828 461 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 ETS2P15036 469 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 TNFRSF1BP20333 461 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 PRKACGP22612 351 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 MYF6P23409 242 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 KCNJ5P48544 419 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 ARHGDIAP52565 204 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 ID2Q02363 134 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 KCNC4Q03721 635 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 MGAT2Q10469 447 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 COL9A2Q14055 689 aaPredicted RBP11.89□□□□□ -0.51
USP3-213ENST00000559711 NR0B2Q15466 257 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 EXOSC6Q5RKV6 272 aaKnown RBP11.89□□□□□ -0.51
USP3-213ENST00000559711 MFSD12Q6NUT3 480 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 CDC73Q6P1J9 531 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 FAM111BQ6SJ93 734 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 USP51Q70EK9 711 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 CEP68Q76N32 757 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 RABEPKQ7Z6M1 372 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 KRT73Q86Y46 540 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 ZNF595Q8IYB9 648 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 CCDC74AQ96AQ1 378 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 CTHRC1Q96CG8 243 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 TRNT1Q96Q11 434 aaKnown RBP11.89□□□□□ -0.51
USP3-213ENST00000559711 EPYCQ99645 322 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 BTBD2Q9BX70 525 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 RUBCNLQ9H714 662 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 REEP1Q9H902 201 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 TMEM9Q9P0T7 183 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 SAMHD1Q9Y3Z3 626 aaKnown RBP11.89□□□□□ -0.51
USP3-213ENST00000559711 KCNE3Q9Y6H6 103 aa11.89□□□□□ -0.51
USP3-213ENST00000559711 U3KQA8 63 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms