RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CNR2P34972 360 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 LIPAP38571 399 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 RXRGP48443 463 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 CXCR4P61073 352 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 PPP1CAP62136 330 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 C1orf61Q13536 156 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ALG11Q2TAA5 492 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 TMEM35AQ53FP2 167 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 COLEC12Q5KU26 742 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 FRMPD2BQ6IN97 320 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 PRSS41Q7RTY9 318 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ZNF438Q7Z4V0 828 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 SNX29P2Q8IUI4 249 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 SLC15A4Q8N697 577 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 TTLQ8NG68 377 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 OR6T1Q8NGN1 323 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 SLC7A13Q8TCU3 470 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ABTB1Q969K4 478 aaPredicted RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 FAM131CQ96AQ9 280 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 KIR3DX1Q9H7L2 352 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 GPN2Q9H9Y4 310 aaPredicted RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 P2RX2Q9UBL9 471 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ENTPD4Q9Y227 616 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 TMEM247A6NEH6 219 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 TRIM64BA6NI03 449 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 PROM1O43490 865 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 EPPINO95925 133 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 GABRG2P18507 467 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 TNNI3P19429 210 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ELAVL4P26378 380 aaKnown RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 KCNJ5P48544 419 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 SRP54P61011 504 aaKnown RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 TARDBPQ13148 414 aaKnown RBP eCLIP10.01□□□□□ -0.812e-6■■■■□ 24.1
CUX1-217ENST00000558836 ZNF770Q6IQ21 691 aaPredicted RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 ZNF425Q6IV72 752 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 DHRS4L2Q6PKH6 230 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ARHGAP22Q7Z5H3 698 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ANKRD13BQ86YJ7 626 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 DEFB119Q8N690 84 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 IQCF1Q8N6M8 205 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 OR13H1Q8NG92 308 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 RLN3Q8WXF3 142 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ARSGQ96EG1 525 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 SCARF2Q96GP6 870 aaPredicted RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 CNDP2Q96KP4 475 aaKnown RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 ZNF354BQ96LW1 612 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 ZNF607Q96SK3 696 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 GAS2L1Q99501 681 aaPredicted RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 PITHD1Q9GZP4 211 aaPredicted RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 TAS2R7Q9NYW3 318 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 KLF15Q9UIH9 416 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 TMCC3Q9ULS5 477 aa10.01□□□□□ -0.81
CUX1-217ENST00000558836 MRPS2Q9Y399 296 aaKnown RBP10.01□□□□□ -0.81
CUX1-217ENST00000558836 CLDN24A6NM45 220 aa10□□□□□ -0.81
CUX1-217ENST00000558836 C2CD4DB7Z1M9 353 aa10□□□□□ -0.81
CUX1-217ENST00000558836 FCMRO60667 390 aa10□□□□□ -0.81
CUX1-217ENST00000558836 TBX19O60806 448 aa10□□□□□ -0.81
CUX1-217ENST00000558836 CD36P16671 472 aa10□□□□□ -0.81
CUX1-217ENST00000558836 HNRNPA2B1P22626 353 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 AHRP35869 848 aa10□□□□□ -0.81
CUX1-217ENST00000558836 ST13P50502 369 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 HMGA2P52926 109 aa10□□□□□ -0.81
CUX1-217ENST00000558836 ST3GAL4Q11206 333 aa10□□□□□ -0.81
CUX1-217ENST00000558836 DCST1Q5T197 706 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SLC48A1Q6P1K1 146 aa10□□□□□ -0.81
CUX1-217ENST00000558836 PRSS48Q7RTY5 328 aa10□□□□□ -0.81
CUX1-217ENST00000558836 P2RY8Q86VZ1 359 aa10□□□□□ -0.81
CUX1-217ENST00000558836 NRROSQ86YC3 692 aa10□□□□□ -0.81
CUX1-217ENST00000558836 TRIM48Q8IWZ4 208 aa10□□□□□ -0.81
CUX1-217ENST00000558836 FAM160A2Q8N612 972 aaPredicted RBP10□□□□□ -0.81
CUX1-217ENST00000558836 MFSD9Q8NBP5 474 aa10□□□□□ -0.81
CUX1-217ENST00000558836 RNF167Q9H6Y7 350 aa10□□□□□ -0.81
CUX1-217ENST00000558836 OR6C2Q9NZP2 312 aa10□□□□□ -0.81
CUX1-217ENST00000558836 CES1P1Q9UKY3 287 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SNX7Q9UNH6 387 aa10□□□□□ -0.81
CUX1-217ENST00000558836 WBP11Q9Y2W2 641 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 PCDHGB1Q9Y5G3 927 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SEC16AO15027 2179 aa10□□□□□ -0.81
CUX1-217ENST00000558836 E9PQ18 207 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SERPINB7O75635 380 aa10□□□□□ -0.81
CUX1-217ENST00000558836 H1F0P07305 194 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 F3P13726 295 aa10□□□□□ -0.81
CUX1-217ENST00000558836 IGFBP4P22692 258 aa10□□□□□ -0.81
CUX1-217ENST00000558836 ABATP80404 500 aa10□□□□□ -0.81
CUX1-217ENST00000558836 CHRNEQ04844 493 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SRSF5Q13243 272 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 ELOAQ14241 798 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 SYT6Q5T7P8 510 aaPredicted RBP10□□□□□ -0.81
CUX1-217ENST00000558836 MRM1Q6IN84 353 aaKnown RBP10□□□□□ -0.81
CUX1-217ENST00000558836 PTCHD4Q6ZW05 846 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SLCO6A1Q86UG4 719 aa10□□□□□ -0.81
CUX1-217ENST00000558836 VRK2Q86Y07 508 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SLC22A18ASQ8N1D0 253 aa10□□□□□ -0.81
CUX1-217ENST00000558836 SLC44A3Q8N4M1 653 aa10□□□□□ -0.81
CUX1-217ENST00000558836 DNAJC22Q8N4W6 341 aa10□□□□□ -0.81
CUX1-217ENST00000558836 NUP43Q8NFH3 380 aa10□□□□□ -0.81
CUX1-217ENST00000558836 B3GNT7Q8NFL0 401 aa10□□□□□ -0.81
CUX1-217ENST00000558836 OR2A14Q96R47 310 aa10□□□□□ -0.81
CUX1-217ENST00000558836 PHOX2BQ99453 314 aa10□□□□□ -0.81
CUX1-217ENST00000558836 PSORS1C1Q9UIG5 152 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms