RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DEPDC1Q5TB30 811 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 BICRALQ6AI39 1079 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 TRMT10BQ6PF06 316 aaKnown RBP15.42■□□□□ 0.06
VPS29-204ENST00000548259 TMEM64Q6YI46 380 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 DGAT2L6Q6ZPD8 337 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 LRRC70Q7Z2Q7 622 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 IGDCC3Q8IVU1 814 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 ZCCHC7Q8N3Z6 543 aaKnown RBP15.42■□□□□ 0.06
VPS29-204ENST00000548259 FAM83FQ8NEG4 500 aaPredicted RBP15.42■□□□□ 0.06
VPS29-204ENST00000548259 MS4A14Q96JA4 679 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 MED18Q9BUE0 208 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 ACTR8Q9H981 624 aa15.42■□□□□ 0.06
VPS29-204ENST00000548259 TRIM64A6NGJ6 449 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 TRIM64BA6NI03 449 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 GNB5O14775 395 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 MSTNO14793 375 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 CTIFO43310 598 aaKnown RBP15.41■□□□□ 0.06
VPS29-204ENST00000548259 SLC35E2BP0CK96 405 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 SLC35E2P0CK97 266 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 NR2F6P10588 404 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 CD22P20273 847 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 MC3RP41968 323 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 POU4F1Q01851 419 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 SRYQ05066 204 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 HP1BP3Q5SSJ5 553 aaPredicted RBP15.41■□□□□ 0.06
VPS29-204ENST00000548259 DCST1Q5T197 706 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 SLC30A6Q6NXT4 461 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 AAGABQ6PD74 315 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 CYP20A1Q6UW02 462 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 ANGPTL8Q6UXH0 198 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 YRDCQ86U90 279 aaKnown RBP15.41■□□□□ 0.06
VPS29-204ENST00000548259 GRAMD2AQ8IUY3 354 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 LAS2Q8IYD9 372 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 C17orf47Q8NEP4 570 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 OR7G3Q8NG95 312 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 OR14L1PQ8NHC6 308 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 DOK4Q8TEW6 326 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 PIK3IP1Q96FE7 263 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 UCN2Q96RP3 112 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 TUBA1CQ9BQE3 449 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 OR51B5Q9H339 312 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 RHOJQ9H4E5 214 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 C6orf203Q9P0P8 240 aaPredicted RBP15.41■□□□□ 0.06
VPS29-204ENST00000548259 TXNDC16Q9P2K2 825 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 PTBP2Q9UKA9 531 aaKnown RBP15.41■□□□□ 0.06
VPS29-204ENST00000548259 JRKLQ9Y4A0 524 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 EML6Q6ZMW3 1958 aa15.41■□□□□ 0.06
VPS29-204ENST00000548259 PRAMEF4O60810 478 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CBR3O75828 277 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CNOT4O95628 575 aaKnown RBP15.4■□□□□ 0.06
VPS29-204ENST00000548259 CRHP06850 196 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 RHOXF2BP0C7M4 288 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CCDC166P0CW27 439 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 NAGAP17050 411 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 PTPN6P29350 595 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 SNTA1Q13424 505 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 DDX39BQ13838 428 aaKnown RBP15.4■□□□□ 0.06
VPS29-204ENST00000548259 MORF4L2Q15014 288 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 FBXO48Q5FWF7 155 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 FNDC7Q5VTL7 733 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 PRAMEF9Q5VWM5 478 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 STEAP4Q687X5 459 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 C18orf63Q68DL7 685 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 OR2A2Q6IF42 318 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CHMP1BQ7LBR1 199 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 P4HA3Q7Z4N8 544 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 GALNT12Q8IXK2 581 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 GCNT2Q8N0V5 402 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 PDPRQ8NCN5 879 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 SLC44A1Q8WWI5 657 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 ESAMQ96AP7 390 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 FAM111AQ96PZ2 611 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 SLC39A3Q9BRY0 314 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 GSX2Q9BZM3 304 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CD244Q9BZW8 370 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 RNF112Q9ULX5 631 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CFL2Q9Y281 166 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 PSAT1Q9Y617 370 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 ARID1AO14497 2285 aa15.4■□□□□ 0.06
VPS29-204ENST00000548259 CRLF1O75462 422 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 SMNDC1O75940 238 aaKnown RBP eCLIP15.39■□□□□ 0.057e-7■■□□□ 12.1
VPS29-204ENST00000548259 PTX3P26022 381 aaPredicted RBP15.39■□□□□ 0.05
VPS29-204ENST00000548259 PIK3CBP42338 1070 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 ARL4CP56559 192 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 IFNEQ86WN2 208 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 OR7G1Q8NGA0 311 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 REPS1Q96D71 796 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 SORBS1Q9BX66 1292 aaKnown RBP15.39■□□□□ 0.05
VPS29-204ENST00000548259 CXorf21Q9HAI6 301 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 KLHL28Q9NXS3 571 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 KLRF1Q9NZS2 232 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 OPTCQ9UBM4 332 aa15.39■□□□□ 0.05
VPS29-204ENST00000548259 GLOD5A6NK44 160 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 SNPHO15079 494 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 TMCC2O75069 709 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 IFNA2P01563 188 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 CRYGSP22914 178 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 PIK3R1P27986 724 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 ABCD3P28288 659 aa15.38■□□□□ 0.05
VPS29-204ENST00000548259 SSTR4P31391 388 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms