RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	PPP2R2D	Q66LE6	453 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	UNC5D	Q6UXZ4	953 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	ADAMTSL4	Q6UY14	1074 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RBM45	Q8IUH3	476 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	HORMAD2	Q8N7B1	307 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	OR14C36	Q8NHC7	312 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	SLC38A5	Q8WUX1	472 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TMEM80	Q96HE8	168 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	C12orf66	Q96MD2	445 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	MKRN2	Q9H000	416 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TIGAR	Q9NQ88	270 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TMCC3	Q9ULS5	477 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	NOX1	Q9Y5S8	564 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TRIO	O75962	3097 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	PLXND1	Q9Y4D7	1925 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	PPM1D	O15297	605 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	CAPN5	O15484	640 aa	Predicted RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	APOD	P05090	189 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	POU2F2	P09086	479 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	PSMA1	P25786	263 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RPL3	P39023	403 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RORC	P51449	518 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	ARMC4	Q5T2S8	1044 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	METRNL	Q641Q3	311 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TMPRSS11A	Q6ZMR5	421 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	ZNF517	Q6ZMY9	492 aa	Predicted RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	KRT73	Q86Y46	540 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	KRT78	Q8N1N4	520 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	GPR32P1	Q8NGA4	272 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	OR5K2	Q8NHB8	316 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	APOBEC4	Q8WW27	367 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RAB8B	Q92930	207 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RAB7B	Q96AH8	199 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	WDR34	Q96EX3	536 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	SLC6A18	Q96N87	628 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	WFDC6	Q9BQY6	131 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	NLN	Q9BYT8	704 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	NPAP1	Q9NZP6	1156 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	ZFR2	Q9UPR6	939 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	C5orf58	C9J3I9	102 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	AGRP	O00253	132 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	PLPP1	O14494	284 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RGS13	O14921	159 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	SLC31A1	O15431	190 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	OR1F1	O43749	312 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	ADA	P00813	363 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	UQCRC2	P22695	453 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	ELAVL4	P26378	380 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	PTGER1	P34995	402 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TAB1	Q15750	504 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	LIPK	Q5VXJ0	399 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	SLX4IP	Q5VYV7	408 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TCTN3	Q6NUS6	607 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	SYCE2	Q6PIF2	218 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	DEF8	Q6ZN54	512 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	FAM129C	Q86XR2	697 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	TCEANC	Q8N8B7	351 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	LINC01555	Q8NAE3	123 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	UCN3	Q969E3	161 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	DMRTB1	Q96MA1	342 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	POLR2J2	Q9GZM3	115 aa	Known RBP	11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	RERGL	Q9H628	205 aa		11.84	□□□□□ -0.51
RNF4-222	ENST00000541204	NUP210	Q8TEM1	1887 aa	Predicted RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	WASHC1	A8K0Z3	465 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	TFEC	O14948	347 aa	Predicted RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	UGT2B17	O75795	530 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SEMA3D	O95025	777 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	TBX6	O95947	436 aa	Predicted RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	CHRM5	P08912	532 aa	Predicted RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	MAPK12	P53778	367 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SNRPG	P62308	76 aa	Known RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	PSPH	P78330	225 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	ZNF91	Q05481	1191 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	ILK	Q13418	452 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	KRT33B	Q14525	404 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	DCST1	Q5T197	706 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	CASP12	Q6UXS9	341 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	WASH2P	Q6VEQ5	465 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SZRD1	Q7Z422	152 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SLC9B2	Q86UD5	537 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	PDXP	Q96GD0	296 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	TMEM19	Q96HH6	336 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	INSM2	Q96T92	566 aa	Predicted RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	OR2B2	Q9GZK3	357 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SLAMF7	Q9NQ25	335 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	STUB1	Q9UNE7	303 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	GPSM3	Q9Y4H4	160 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	IL7	P13232	177 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	XK	P51811	444 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	HSPB3	Q12988	150 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SGCG	Q13326	291 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	LCTL	Q6UWM7	567 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	ADGRF3	Q8IZF5	1079 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	IQCF1	Q8N6M8	205 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	OR4D11	Q8NGI4	311 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	SETD6	Q8TBK2	473 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	EXOSC8	Q96B26	276 aa	Known RBP	11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	MND1	Q9BWT6	205 aa		11.83	□□□□□ -0.52
RNF4-222	ENST00000541204	TSSK6	Q9BXA6	273 aa		11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms