RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 CDNFQ49AH0 187 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 TAS1R3Q7RTX0 852 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 HDAC2Q92769 488 aaKnown RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 CNN2Q99439 309 aaKnown RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 SLC22A31A6NKX4 558 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 RTCAO00442 366 aaKnown RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 HTRA2O43464 458 aaPredicted RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 CRISP1P54107 249 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 PITX1P78337 314 aaPredicted RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 IL1RNP18510 177 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 SIM1P81133 766 aaPredicted RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 ABHD17BQ5VST6 288 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 CRTC1Q6UUV9 634 aa17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 MAMDC2Q7Z304 686 aaPredicted RBP17.34■□□□□ 0.37
SFSWAP-203ENST00000535236 TRBV2A0A0J9YWF9 115 aa17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 SCAMP2O15127 329 aaKnown RBP17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 RHCEP18577 417 aa17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 NDUFV2P19404 249 aa17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 SPINT3P49223 89 aa17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 LSM14AQ8ND56 463 aaKnown RBP17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 HOXD1Q9GZZ0 328 aa17.33■□□□□ 0.37
SFSWAP-203ENST00000535236 PHYHO14832 338 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 PYCR1P32322 319 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 CD97P48960 835 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 LRRC37A5PQ49AS3 106 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 FAM205BPQ63HN1 556 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 KLHDC8AQ8IYD2 350 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 C16orf58Q96GQ5 468 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 TMEM165Q9HC07 324 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 COPZ2Q9P299 210 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 NKX1-2Q9UD57 310 aaPredicted RBP17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 SDHDO14521 159 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 RFPL1O75677 317 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 OXSR1O95747 527 aaPredicted RBP17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 FESP07332 822 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 ELK4P28324 431 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 CD70P32970 193 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 HOXD13P35453 343 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 HORMAD2Q8N7B1 307 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 NLGN4YQ8NFZ3 816 aaPredicted RBP17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 FBXL8Q96CD0 374 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 HTR1EP28566 365 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 NFE2L1Q14494 772 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 HMBOX1Q6NT76 420 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 LHFPL3Q86UP9 236 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 CNIH3Q8TBE1 160 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 TMEM9Q9P0T7 183 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 SCML1Q9UN30 329 aa17.33■□□□□ 0.36
SFSWAP-203ENST00000535236 ANHXE9PGG2 379 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 MEN1O00255 615 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 FBP2O00757 339 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 KDELR2P33947 212 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 CDKN2DP55273 166 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 ZNF829Q3KNS6 432 aaPredicted RBP17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 CREB3L4Q8TEY5 395 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 PAAF1Q9BRP4 392 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 AIG1Q9NVV5 245 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 ACSL6Q9UKU0 697 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 CLCA1A8K7I4 914 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 PROS1P07225 676 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 TUBG1P23258 451 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 RCAN2Q14206 197 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 TRAPPC6BQ86SZ2 158 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 FAM46BQ96A09 425 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 TIMM8BQ9Y5J9 83 aaPredicted RBP17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 FAM189A1O60320 539 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 EEDO75530 441 aaKnown RBP17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 KCNAB2Q13303 367 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 RAB33AQ14088 237 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 MAMDC4Q6UXC1 1216 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 CHCHD4Q8N4Q1 142 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 FIBINQ8TAL6 211 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 KCNK12Q9HB15 430 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 CDH20Q9HBT6 801 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 INMT-MINDY4F8WBC2 141 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 H0YAE9 185 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 EEF1E1O43324 174 aaKnown RBP17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 PEX14O75381 377 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 BPIP17213 487 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 ACVR1BP36896 505 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 ACY1Q03154 408 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 MANEALQ5VSG8 457 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 EEF1A1P5Q5VTE0 462 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 OR8J1Q8NGP2 316 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 C2orf42Q9NWW7 574 aa17.32■□□□□ 0.36
SFSWAP-203ENST00000535236 PRAMEF2O60811 474 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 FDXRP22570 491 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 HNRNPA2B1P22626 353 aaKnown RBP17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 PTGS2P35354 604 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 GPR4P46093 362 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 RSU1Q15404 277 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 BCL2L15Q5TBC7 163 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 BAIAP2L2Q6UXY1 529 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 UEVLDQ8IX04 471 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 SYT4Q9H2B2 425 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 MARCH4Q9P2E8 410 aaPredicted RBP17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 CLIC3O95833 236 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 CTSAP10619 480 aa17.31■□□□□ 0.36
SFSWAP-203ENST00000535236 MOGQ16653 247 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms