RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CA13Q8N1Q1 262 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 CBR4Q8N4T8 237 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 OR5L2Q8NGL0 311 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 TMEM19Q96HH6 336 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 TRNT1Q96Q11 434 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 CMKLR1Q99788 373 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 CIB1Q99828 191 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PINK1Q9BXM7 581 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ALOXE3Q9BYJ1 711 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 YTHDF1Q9BYJ9 559 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 POLR2J2Q9GZM3 115 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 POLR2J3Q9H1A7 115 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 ADNPQ9H2P0 1102 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 KLHL31Q9H511 634 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 SH3GLB1Q9Y371 365 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ATG4BQ9Y4P1 393 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 DENND4AQ7Z401 1863 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 CKAP5Q14008 2032 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PRAMEF4O60810 478 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 SELENOWP63302 87 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CSNK2BP67870 215 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ALDH6A1Q02252 535 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 ANGPT1Q15389 498 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 NRF1Q16656 503 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PRAMEF9Q5VWM5 478 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CDC73Q6P1J9 531 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 C8orf82Q6P1X6 216 aaPredicted RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 ZNF550Q7Z398 422 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 TOR1AIP2Q8NFQ8 470 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR9A2Q8NGT5 310 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR9A4Q8NGU2 314 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 STACQ99469 402 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 GLIPR2Q9H4G4 154 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 RIBC2Q9H4K1 309 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 FGF21Q9NSA1 209 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 WDR70Q9NW82 654 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 H2AFY2Q9P0M6 372 aaPredicted RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 POFUT2Q9Y2G5 429 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 LRRC42Q9Y546 428 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ASB4Q9Y574 426 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PCDHGB2Q9Y5G2 931 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 POLR1CO15160 346 aaPredicted RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 RASAL1O95294 804 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CAPGP40121 348 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 MC3RP41968 323 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 XCR1P46094 333 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PDK3Q15120 406 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CWF19L1Q69YN2 538 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 MRM1Q6IN84 353 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 PPP4R4Q6NUP7 873 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PDSS2Q86YH6 399 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 GATAD2AQ86YP4 633 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 SLC35F3Q8IY50 421 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 SVOPQ8N4V2 548 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR4D9Q8NGE8 314 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR51Q1Q8NH59 317 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PIGXQ8TBF5 258 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 TMBIM1Q969X1 311 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ZC3H10Q96K80 434 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 FCRL4Q96PJ5 515 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ZPBPQ9BS86 351 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 KIF26AQ9ULI4 1882 aaPredicted RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 A0A1W2PR48 441 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PCDHGA12O60330 932 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR10H3O60404 316 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 EML2O95834 649 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 H1F0P07305 194 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 ZNF883P0CG24 379 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CDKN2CP42773 168 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 TMED10P49755 219 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 RAB15P59190 212 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ST3GAL3Q11203 375 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 VN1R5Q7Z5H4 357 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 VN1R4Q7Z5H5 301 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 DNAJC22Q8N4W6 341 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 FRMD1Q8N878 549 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 FAM181AQ8N9Y4 354 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR52L1Q8NGH7 329 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 OR9Q1Q8NGQ5 310 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CXorf36Q9H7Y0 433 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 COQ10BQ9H8M1 238 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CCNB1IP1Q9NPC3 277 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ABI3Q9P2A4 366 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 MUC22E2RYF6 1773 aaPredicted RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 IRGMA1A4Y4 181 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 SIGLEC6O43699 453 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CPNE3O75131 537 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 FESP07332 822 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 CELA2BP08218 269 aaPredicted RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 SELPLGQ14242 412 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ZNF786Q8N393 782 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 TM4SF19Q96DZ7 209 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 PIP5K1AQ99755 562 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 RYDENQ9NUL5 291 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 ACSL6Q9UKU0 697 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 GMPPBQ9Y5P6 360 aa7.88□□□□□ -1.15
USP54-215ENST00000497106 ZNF106Q9H2Y7 1883 aaKnown RBP7.88□□□□□ -1.15
USP54-215ENST00000497106 A0A087WXM4 84 aa7.87□□□□□ -1.15
USP54-215ENST00000497106 H0YAE9 185 aa7.87□□□□□ -1.15
USP54-215ENST00000497106 hCG_2039718K7EN88 272 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms