RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 INTS1Q8N201 2190 aaKnown RBP17.06■□□□□ 0.32
COL7A1-209ENST00000474432 FOXO6A8MYZ6 492 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 GOLGA8RI6L899 631 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SUSD5O60279 629 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 TRIM3O75382 744 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SUPT7LO94864 414 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 RHOXF2BP0C7M4 288 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 PORP16435 677 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-209ENST00000474432 IGFBP2P18065 325 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 IMPDH1P20839 514 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SERPINB3P29508 390 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 HTR6P50406 440 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 TFF3Q07654 80 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SLC10A1Q14973 349 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 PRICKLE4Q2TBC4 344 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 TMEM211Q6ICI0 200 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 FAM111BQ6SJ93 734 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SH2D5Q6ZV89 423 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 GDF7Q7Z4P5 450 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 LCA5Q86VQ0 697 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 CCDC71Q8IV32 467 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-209ENST00000474432 C1orf52Q8N6N3 182 aaKnown RBP17.06■□□□□ 0.32
COL7A1-209ENST00000474432 CDYL2Q8N8U2 506 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 FAM13CQ8NE31 585 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 LILRB4Q8NHJ6 448 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 CA5BP1Q8WTZ4 195 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 CHTF18Q8WVB6 975 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 ZNF681Q96N22 645 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 ZNF382Q96SR6 550 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SPOCK3Q9BQ16 436 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 RHOXF2Q9BQY4 288 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 COQ3Q9NZJ6 369 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 MAT2BQ9NZL9 334 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 HEY2Q9UBP5 337 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 FETUBQ9UGM5 382 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 SNX6Q9UNH7 406 aa17.06■□□□□ 0.32
COL7A1-209ENST00000474432 C1orf226A1L170 272 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 ANKRD33BA6NCL7 494 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 BCKDKO14874 412 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 TOXO94900 526 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 NT5EP21589 574 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 GPX3P22352 226 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 ATP5F1P24539 256 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-209ENST00000474432 ACVR2AP27037 513 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 PRKAA2P54646 552 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 FBXW4P57775 412 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 KCNJ2P63252 427 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 RAE1P78406 368 aaKnown RBP17.05■□□□□ 0.32
COL7A1-209ENST00000474432 PMPCAQ10713 525 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 MAP4K2Q12851 820 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 FNDC7Q5VTL7 733 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 BICRALQ6AI39 1079 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 FAM180BQ6P0A1 224 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 GSPT2Q8IYD1 628 aaKnown RBP17.05■□□□□ 0.32
COL7A1-209ENST00000474432 OR5M3Q8NGP4 307 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 CTHRC1Q96CG8 243 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 L3HYPDHQ96EM0 354 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 C11orf24Q96F05 449 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-209ENST00000474432 CNRIP1Q96F85 164 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-209ENST00000474432 UCK2Q9BZX2 261 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 NPDC1Q9NQX5 325 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-209ENST00000474432 NPFFR2Q9Y5X5 522 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 ARHGAP21Q5T5U3 1957 aa17.05■□□□□ 0.32
COL7A1-209ENST00000474432 TRGV5A0A0B4J1U4 118 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 A0A1W2PPM1 405 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 HCN1O60741 890 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 ATP1B1P05026 303 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 GLI4P10075 376 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 PYGBP11216 843 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 TAC1P20366 129 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 CHRNB4P30926 498 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 FEN1P39748 380 aaKnown RBP17.04■□□□□ 0.32
COL7A1-209ENST00000474432 MAN2A2P49641 1150 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 KRTAP10-9P60411 292 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 RASA2Q15283 850 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 TAGAPQ8N103 731 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 C17orf47Q8NEP4 570 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 OR7G1Q8NGA0 311 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 SPPL2AQ8TCT8 520 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 ACMSDQ8TDX5 336 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 ASB5Q8WWX0 329 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 RND1Q92730 232 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 LURAP1Q96LR2 239 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 TTYH2Q9BSA4 534 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 ACPTQ9BZG2 426 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 NXF5Q9H1B4 397 aaKnown RBP17.04■□□□□ 0.32
COL7A1-209ENST00000474432 SLC6A15Q9H2J7 730 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 GSTO2Q9H4Y5 243 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 ACKR4Q9NPB9 350 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 VPS29Q9UBQ0 182 aa17.04■□□□□ 0.32
COL7A1-209ENST00000474432 NKX2-6A6NCS4 301 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 ENO4A6NNW6 628 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 UBFD1O14562 309 aaKnown RBP17.03■□□□□ 0.32
COL7A1-209ENST00000474432 CBX7O95931 251 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 HSD3B1P14060 373 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 HSD3B2P26439 372 aa17.03■□□□□ 0.32
COL7A1-209ENST00000474432 TRA2BP62995 288 aaKnown RBP17.03■□□□□ 0.32
COL7A1-209ENST00000474432 CSTF3Q12996 717 aaKnown RBP17.03■□□□□ 0.32
COL7A1-209ENST00000474432 EXOSC7Q15024 291 aaKnown RBP17.03■□□□□ 0.32
COL7A1-209ENST00000474432 RPS6KA2Q15349 733 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms