RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 APOBEC4Q8WW27 367 aaKnown RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 NEIL2Q969S2 332 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 UBL7Q96S82 380 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 KATNB1Q9BVA0 655 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 MED28Q9H204 178 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 MIXL1Q9H2W2 232 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CLEC4MQ9H2X3 399 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 BCL2L10Q9HD36 194 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 INPP5EQ9NRR6 644 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZNF275Q9NSD4 429 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 CBLCQ9ULV8 474 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 NCKAP1Q9Y2A7 1128 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RNF215Q9Y6U7 377 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 KIAA1671Q9BY89 1806 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PLXNB3Q9ULL4 1909 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 A0A0G2JPF8 293 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 GSAPA4D1B5 854 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 A8MX80 341 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 KDM4EB2RXH2 506 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 HNRNPCL2B2RXH8 293 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 HNRNPCL3B7ZW38 293 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SHOXO15266 292 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SSX4O60224 188 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TMEM127O75204 238 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 C1orf105O95561 183 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ETHE1O95571 254 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 FGF19O95750 216 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 IFNA7P01567 189 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SOD2P04179 222 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CKMP06732 381 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 KLK1P06870 262 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 HNRNPCL4P0DMR1 293 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 NR2F1P10589 423 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 STOMP27105 288 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RBMS1P29558 406 aaKnown RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 ACSL1P33121 698 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 STAT5AP42229 794 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RAG2P55895 527 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RAB14P61106 215 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TAP2Q03519 686 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 IKZF1Q13422 519 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ARHGAP19Q14CB8 494 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TRAM2Q15035 370 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PRAMEF14Q5SWL7 426 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 HENMT1Q5T8I9 393 aaKnown RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 PRAMEF13Q5VWM6 474 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TCTN3Q6NUS6 607 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PAMR1Q6UXH9 720 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 DPPA4Q7L190 304 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZNF765Q7L2R6 523 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 MRGPREQ86SM8 312 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TPRA1Q86W33 373 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 NUDT13Q86X67 352 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TTLQ8NG68 377 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PIGXQ8TBF5 258 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SLC38A5Q8WUX1 472 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SNAPC3Q92966 411 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RAD51AP1Q96B01 352 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 OR4K3Q96R72 315 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SOSTQ9BQB4 213 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ARHGAP9Q9BRR9 750 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PINK1Q9BXM7 581 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZNF717Q9BY31 904 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.8□□□□□ -1.482e-7■■□□□ 11.7
HERC4-209ENST00000473533 HDHD2Q9H0R4 259 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 DPEP2Q9H4A9 486 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 AKAP7Q9P0M2 348 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 COMMD3Q9UBI1 195 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CLEC2DQ9UHP7 191 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 GOLGA4Q13439 2230 aaKnown RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 KIAA0355O15063 1070 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TPD52L2O43399 206 aaKnown RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 TSPAN6O43657 245 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 STX11O75558 287 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ARSBP15848 533 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 HK1P19367 917 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 BDKRB1P46663 353 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZNF157P51786 506 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 RACK1P63244 317 aaKnown RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 TMEM64Q6YI46 380 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZNF852Q6ZMS4 543 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 RASSF6Q6ZTQ3 369 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 C6orf120Q7Z4R8 191 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SLC9B2Q86UD5 537 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 TBC1D19Q8N5T2 526 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ARL14EPQ8N8R7 260 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 SLC37A3Q8NCC5 494 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 OR4K5Q8NGD3 323 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ADAMTS19Q8TE59 1207 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CIDECQ96AQ7 238 aaPredicted RBP5.8□□□□□ -1.48
HERC4-209ENST00000473533 OR2M2Q96R28 347 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ZIC5Q96T25 663 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 SLC6A16Q9GZN6 736 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 DPAGT1Q9H3H5 408 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 PPP1R3EQ9H7J1 279 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 ATP13A2Q9NQ11 1180 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 CFAP97Q9P2B7 532 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 LIPT1Q9Y234 373 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 NUBP2Q9Y5Y2 271 aa5.8□□□□□ -1.48
HERC4-209ENST00000473533 STON1Q9Y6Q2 735 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms