RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLCO4C1Q6ZQN7 724 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 ABI3BPQ7Z7G0 1075 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 VASH2Q86V25 355 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 OR51Q1Q8NH59 317 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SUN3Q8TAQ9 357 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 ADAMTS16Q8TE57 1224 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 C17orf50Q8WW18 174 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 HPS1Q92902 700 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SLC35B4Q969S0 331 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 C5orf34Q96MH7 638 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 MAPKAP1Q9BPZ7 522 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 NEURL2Q9BR09 285 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 APMAPQ9HDC9 416 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 DMRT3Q9NQL9 472 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TMEM181Q9P2C4 612 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 ANAPC2Q9UJX6 822 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 INTS1Q8N201 2190 aaKnown RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 UBFD1O14562 309 aaKnown RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 RETP07949 1114 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 GSTT2P0CG29 244 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 GSTT2BP0CG30 244 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 OR12D1P0DN82 309 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 GANABQ14697 944 aaKnown RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 COLEC12Q5KU26 742 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SLC25A45Q8N413 288 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SLC25A36Q96CQ1 311 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TMEM121BQ9BXQ6 578 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TMEM185BQ9H7F4 350 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TPT1P8Q9HAU6 139 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TEKT2Q9UIF3 430 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 C17orf105B2RV13 164 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 AP3D1O14617 1153 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ALOX5P09917 674 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 C7P10643 843 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 AHCYP23526 432 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 MC3RP41968 323 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 NRG3P56975 720 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 TARDBPQ13148 414 aaKnown RBP eCLIP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 LCTLQ6UWM7 567 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 HACD2Q6Y1H2 254 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 CYHR1Q6ZMK1 362 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 NANOGNBQ7Z5D8 188 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 NRROSQ86YC3 692 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 SIRT6Q8N6T7 355 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 REEP4Q9H6H4 257 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 CD300AQ9UGN4 299 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 TRPS1Q9UHF7 1281 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 B3GNT3Q9Y2A9 372 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ATRXP46100 2492 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 OR7A17O14581 309 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 RASAL1O95294 804 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 GPIP06744 558 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 RPS17P08708 135 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 POU3F3P20264 500 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 HIST1H1TP22492 207 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 RPL4P36578 427 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 FOLR3P41439 243 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 CAPZA2P47755 286 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 IDH2P48735 452 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 HLCSP50747 726 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 EPS8Q12929 822 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 FAM98BQ52LJ0 330 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 CCNJQ5T5M9 372 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 GRHL2Q6ISB3 625 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF773Q6PK81 442 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 OR2L5Q8NG80 312 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 C16orf78Q8WTQ4 265 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 TCTN2Q96GX1 697 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 CDC6Q99741 560 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 BDH2Q9BUT1 245 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 WDR12Q9GZL7 423 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 LDAHQ9H6V9 325 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 FAM60AQ9NP50 221 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 NLGN3Q9NZ94 848 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ZFYVE26Q68DK2 2539 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 PIKFYVEQ9Y2I7 2098 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 TRBV5-4A0A0C4DH59 114 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 C2orf72A6NCS6 295 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 M0QX08 132 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 FOLR1P15328 257 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 DNAJB13P59910 316 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 RPS18P62269 152 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 GABREP78334 506 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 TRAF3Q13114 568 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 LAPTM4AQ15012 233 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 FAM111BQ6SJ93 734 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 B3GNT8Q7Z7M8 397 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ZSCAN1Q8NBB4 408 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 OR2A1Q8NGT9 310 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 DIO2Q92813 273 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 MAELQ96JY0 434 aaKnown RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 IMPAD1Q9NX62 359 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ABI3Q9P2A4 366 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 PTGFRNQ9P2B2 879 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF282Q9UDV7 671 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF229Q9UJW7 825 aa9.73□□□□□ -0.85
COL6A3-205ENST00000392004 RPH3AQ9Y2J0 694 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-205ENST00000392004 TRIM64CA6NLI5 447 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 M0R3G1 203 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 OR10H3O60404 316 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms