RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ARFIP1P53367 373 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 NAGLUP54802 743 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 FOXF2Q12947 444 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 E2F2Q14209 437 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 SETDB1Q15047 1291 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 ACKR1Q16570 336 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 DEPDC1Q5TB30 811 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 STEAP4Q687X5 459 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 BICRALQ6AI39 1079 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 MED27Q6P2C8 311 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 ENPP6Q6UWR7 440 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 ZCCHC7Q8N3Z6 543 aaKnown RBP12.62□□□□□ -0.39
VPS29-201ENST00000360579 FAM83FQ8NEG4 500 aaPredicted RBP12.62□□□□□ -0.39
VPS29-201ENST00000360579 OR1J4Q8NGS1 313 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 WNT2BQ93097 391 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 RGMAQ96B86 450 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 MS4A14Q96JA4 679 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 UCN2Q96RP3 112 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 RBSNQ9H1K0 784 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 WDR41Q9HAD4 459 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 NSMCE4AQ9NXX6 385 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 TRPS1Q9UHF7 1281 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 CHMP2BQ9UQN3 213 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 PSAT1Q9Y617 370 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 ARID1AO14497 2285 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 MXRA5Q9NR99 2828 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 TRIM64A6NGJ6 449 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 TRIM64BA6NI03 449 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 SAP18O00422 153 aaKnown RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 CTIFO43310 598 aaKnown RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 CCNT2O60583 730 aaKnown RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 SH3BGRLO75368 114 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 S100BP04271 92 aaPredicted RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 SLC35E2BP0CK96 405 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 SLC35E2P0CK97 266 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 KRT15P19012 456 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 PTPN6P29350 595 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 MC3RP41968 323 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 SLCO1A2P46721 670 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 ATP6V0D1P61421 351 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 MGAT5Q09328 741 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 C18orf63Q68DL7 685 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 TMEM64Q6YI46 380 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 LRRC70Q7Z2Q7 622 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 ADGRE4PQ86SQ3 457 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 PDPRQ8NCN5 879 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 C17orf47Q8NEP4 570 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 OR7G3Q8NG95 312 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 ESAMQ96AP7 390 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 INTS12Q96CB8 462 aaKnown RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 DTNBP1Q96EV8 351 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 PERPQ96FX8 193 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 TUBA1CQ9BQE3 449 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 RHOJQ9H4E5 214 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 LYARQ9NX58 379 aaKnown RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 CD274Q9NZQ7 290 aa12.61□□□□□ -0.39
VPS29-201ENST00000360579 PTBP2Q9UKA9 531 aaKnown RBP12.61□□□□□ -0.39
VPS29-201ENST00000360579 NINQ8N4C6 2090 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 GNB5O14775 395 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 MSTNO14793 375 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 CLPSP04118 112 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 RHOXF2BP0C7M4 288 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 CPOXP36551 454 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 RPS13P62277 151 aaKnown RBP12.6□□□□□ -0.39
VPS29-201ENST00000360579 POU4F1Q01851 419 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 MORF4L2Q15014 288 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 FBXO48Q5FWF7 155 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 HP1BP3Q5SSJ5 553 aaPredicted RBP12.6□□□□□ -0.39
VPS29-201ENST00000360579 SLC30A6Q6NXT4 461 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 TMEM81Q6P7N7 255 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 ANGPTL8Q6UXH0 198 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 THSD4Q6ZMP0 1018 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 YRDCQ86U90 279 aaKnown RBP12.6□□□□□ -0.39
VPS29-201ENST00000360579 DOK4Q8TEW6 326 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 SLC44A1Q8WWI5 657 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 TSPAN17Q96FV3 270 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 SORBS1Q9BX66 1292 aaKnown RBP12.6□□□□□ -0.39
VPS29-201ENST00000360579 GSX2Q9BZM3 304 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 CD244Q9BZW8 370 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 OR51B5Q9H339 312 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 METTL7AQ9H8H3 244 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 UBTD1Q9HAC8 227 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 CXorf21Q9HAI6 301 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 C6orf203Q9P0P8 240 aaPredicted RBP12.6□□□□□ -0.39
VPS29-201ENST00000360579 ADAM21Q9UKJ8 722 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 JRKLQ9Y4A0 524 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 TEX264Q9Y6I9 313 aa12.6□□□□□ -0.39
VPS29-201ENST00000360579 ANK3Q12955 4377 aaKnown RBP12.6□□□□□ -0.39
VPS29-201ENST00000360579 DEFB108AA8MXU0 73 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 CNOT4O95628 575 aaKnown RBP12.59□□□□□ -0.39
VPS29-201ENST00000360579 CRHP06850 196 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 CCDC166P0CW27 439 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 NR2F6P10588 404 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 NAGAP17050 411 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 EPORP19235 508 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 SSTR4P31391 388 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 PIK3CBP42338 1070 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 HNRNPH2P55795 449 aaKnown RBP12.59□□□□□ -0.39
VPS29-201ENST00000360579 CBLBQ13191 982 aa12.59□□□□□ -0.39
VPS29-201ENST00000360579 SNTA1Q13424 505 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms