RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NFKBIEO00221 500 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 OLFM2O95897 454 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF30P17039 623 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 DDCP20711 480 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 RAB28P51157 221 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 HK3P52790 923 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 RBMS3Q6XE24 437 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF679Q8IYX0 411 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CDH20Q9HBT6 801 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 IL26Q9NPH9 171 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CD163L1Q9NR16 1453 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 A0A1W2PPW3 197 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 PTTG1O95997 202 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 PCBP2Q15366 365 aaKnown RBP eCLIP13.35□□□□□ -0.272e-14■■■□□ 15.9
CCDC88A-201ENST00000263630 RAET1LQ5VY80 246 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 NXPE4Q6UWF7 544 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 TMEM150AQ86TG1 271 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ZFAND2BQ8WV99 257 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SDCBP2Q9H190 292 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ADAMTS10Q9H324 1103 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ACTR10Q9NZ32 417 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 PORP16435 677 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 APLNRP35414 380 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 RAB8AP61006 207 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ACSBG2Q5FVE4 666 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 HGSNATQ68CP4 663 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 MS4A15Q8N5U1 240 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 OR10Q1Q8NGQ4 319 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ST7LQ8TDW4 575 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 RADILQ96JH8 1075 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC2A11Q9BYW1 496 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 NUBP2Q9Y5Y2 271 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 FRMPD1Q5SYB0 1578 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 RFPL3O75679 317 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CLEC3BP05452 202 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 OR4K1Q8NGD4 311 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 NDNFQ8TB73 568 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SH3YL1Q96HL8 342 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 BIRC8Q96P09 236 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CNTNAP3Q9BZ76 1288 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 REEP4Q9H6H4 257 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 PRELID3BQ9Y3B1 194 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 NPC1O15118 1278 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ETV5P41161 510 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 TNFSF9P41273 254 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM69AQ5T7M9 428 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 GDPD1Q8N9F7 314 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 TESQ9UGI8 421 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 IQGAP3Q86VI3 1631 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 UNC13AQ9UPW8 1703 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CEP170Q5SW79 1584 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 TSPAN11A1L157 253 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 OPN1SWP03999 348 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 TFPTP0C1Z6 253 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 UGT2B7P16662 529 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CHDHQ8NE62 594 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SEMA6DQ8NFY4 1073 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 HAS3O00219 553 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 IMPA2O14732 288 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 SNAP29O95721 258 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 HBE1P02100 147 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 UBBP0CG47 229 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 UBCP0CG48 685 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 POU3F4P49335 361 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 RAB7AP51149 207 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FXYD4P59646 89 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 RPS27AP62979 156 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 UBA52P62987 128 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 GINS1Q14691 196 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FKBP1CQ5VVH2 108 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 C22orf42Q6IC83 251 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 TMEM173Q86WV6 379 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FBXL16Q8N461 479 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 GMEB2Q9UKD1 530 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 PRSS51A0A1B0GVH4 220 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 F2RP25116 425 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 RAB11AP62491 216 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 OR4F3Q6IEY1 312 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 OR52W1Q6IF63 320 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 KIAA1211LQ6NV74 962 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 LRRN4CLQ8ND94 238 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ZMAT5Q9UDW3 170 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 USP31Q70CQ4 1352 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 STK19P49842 368 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM58AQ8N1B3 248 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 P2RX7Q99572 595 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 H3BSA7 217 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 HPRP00739 348 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 NFATC4Q14934 902 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 SFRP5Q5T4F7 317 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 DCUN1D3Q8IWE4 304 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 OR5L1Q8NGL2 311 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC38A1Q9H2H9 487 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 MINDY3Q9H8M7 445 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FBXW11Q9UKB1 542 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 HLA-HP01893 362 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 PGCP20142 388 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ARSIQ5FYB1 569 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 BAGE3Q86Y29 109 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms