RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 MAGEB10Q96LZ2 347 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 C11orf54Q9H0W9 315 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 KLHL31Q9H511 634 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ANKHQ9HCJ1 492 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 TXNL4BQ9NX01 149 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 FBXW2Q9UKT8 454 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 OR1A2Q9Y585 309 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SERTM1A2A2V5 107 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 CENPXA8MT69 81 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 AVPR1BP47901 424 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 MAN2A2P49641 1150 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 NCBP2P52298 156 aaKnown RBP eCLIP8.63□□□□□ -1.03
MSH4-201ENST00000263187 CLDN2P57739 230 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ST8SIA6P61647 398 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 PDE7AQ13946 482 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 LARS2Q15031 903 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 PDZD3Q86UT5 571 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SLC30A8Q8IWU4 369 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 GALNT12Q8IXK2 581 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 UBQLNLQ8IYU4 475 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 OR4F15Q8NGB8 312 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 OR52I1Q8NGK6 324 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 OR52P1PQ8NH57 321 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SMAP2Q8WU79 429 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 CHAC2Q8WUX2 184 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 TM9SF4Q92544 642 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 PIK3R3Q92569 461 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 COL26A1Q96A83 441 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ARRDC3Q96B67 414 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 TAPBPLQ9BX59 468 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 CMAHPQ9Y471 501 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ZC3H12DA2A288 527 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 OTOL1A6NHN0 477 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 FAM183AA6NL82 134 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 PGRMC2O15173 223 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SPINT1O43278 529 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 HRO43593 1189 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 DDCP20711 480 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 TIE1P35590 1138 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ATP6V1E1P36543 226 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 CLCNKAP51800 687 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 RAB8AP61006 207 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 C1DQ13901 141 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 ARHGEF6Q15052 776 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ZNF791Q3KP31 576 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 SYT14P1Q58G82 188 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 KHDRBS2Q5VWX1 349 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 DPPA4Q7L190 304 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 C12orf76Q8N812 135 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 SLAIN1Q8ND83 568 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SMPDL3AQ92484 453 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 KAT2AQ92830 837 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 DTD2Q96FN9 168 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 PDXPQ96GD0 296 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 MND1Q9BWT6 205 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SGPP1Q9BX95 441 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 MIXL1Q9H2W2 232 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 SLC25A19Q9HC21 320 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 IMP3Q9NV31 184 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 CLEC4AQ9UMR7 237 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 NOTCH4Q99466 2003 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 CD8B2A6NJW9 211 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 FOXE1O00358 373 aaPredicted RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 CASKO14936 926 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 CAPN5O15484 640 aaPredicted RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 SLC2A10O95528 541 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 MSL3P1P0C860 447 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 CD8BP10966 210 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 PSKH1P11801 424 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 SSR2P43308 183 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 GJA8P48165 433 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 HMGA2P52926 109 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 C21orf58P58505 322 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 PSPHP78330 225 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 P2RY14Q15391 338 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 RNASE12Q5GAN4 147 aaKnown RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 ZNF544Q6NX49 715 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 SLC30A6Q6NXT4 461 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 TMEM107Q6UX40 140 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 OR8K5Q8NH50 307 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 C9orf43Q8TAL5 461 aaPredicted RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 FAM46AQ96IP4 442 aaKnown RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 STUB1Q9UNE7 303 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 GPR55Q9Y2T6 319 aaPredicted RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 LSM2Q9Y333 95 aaKnown RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 RPL36Q9Y3U8 105 aaKnown RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 PLEKHM1Q9Y4G2 1056 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 IRAK3Q9Y616 596 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 WDR87Q6ZQQ6 2873 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 TCF20Q9UGU0 1960 aaKnown RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 F5P12259 2224 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 CEP290O15078 2479 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 SH3D21A4FU49 640 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 CCDC182A6NF36 153 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 HOXC11O43248 304 aaPredicted RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 NARSO43776 548 aaKnown RBP8.62□□□□□ -1.03
MSH4-201ENST00000263187 HPGDSO60760 199 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 LILRB5O75023 590 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 LALBAP00709 142 aa8.62□□□□□ -1.03
MSH4-201ENST00000263187 ADAP00813 363 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms